Publikationen
Im Folgenden finden Sie einen Auszug gemeinsamer Publikationen. Als gemeinsame Publikationen werden solche Veröffentlichungen gewertet, an den mindestens zwei Mitglieder des Protein Research Departments beteiligt sind. Die entsprechenden Wissenschaftler sind in Fett-Schrift hervorgehoben. Für eine vollständige Liste aktueller Publiaktionen sei auf die jeweiligen Lehrstuhlseiten der Mitglieder des PRD verwiesen.
http://www.rd.ruhr-uni-bochum.de/protein/wiss/index.html
2023
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Serum neurofilament light chain does not detect self-reported treatment-related fluctuations in chronic inflammatory demyelinating polyneuropathy
Philip Lennart Poser, Gulchan Shazadi Sajid, Léon Beyer, Alina Hieke, Aurelian Schumacher, Lea Horstkemper, Anna-Sophia Karl, Thomas Grüter, Melissa Sgodzai, Kalliopi Pitarokoili, Klaus gerwert, Ralf Gold, Anna Lena Fisse, Barbara Gisevius, Jeremias Motte
Eur. J. Neurol. 2023 Aug 4. doi: 10.1111/ene.16023
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Same same but different – The global response of Escherichia coli to five different LpxC inhibitors
Anna-Maria Möller, Melissa Vásquez-Hernández, Blanka Kutscher, Raffael Brysch, Simon Brückner, Emily Marino, Julia Kleetz, Christoph H.R. Senges, Sina Schäkermann, Julia E. bandow, Franz Narberhaus
bioRxiv. 2023 Jul 26. doi: 10.1101/2023.07.25.550486
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The oxidative stress response, in particular the katY gene, is temperature-regulated in Yersinia pseudotuberculosis
Daniel Scheller, Franziska Becker, Andrea Wimbert, Dominik Meggers, Stephan Pienko0, Christian Twittenhoff, Lisa R. Knoke, Lars I. Leichert, Franz Narberhaus
PLoS Genet. 2023 Jul 10- doi: 10.1371/journal.pgen.1010669
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Fc N-glycosylation of autoreactive Aβ antibodies as a blood-based biomarker for Alzheimer's disease
Yannick Kronimus, Alexandra Albus, Mike Hasenberg, Bernd Walkenfort, Marc Seifert, Bettina Budeus, Janine Gronewold, Dirk M. Hermann, J. Alexander Ross, Günter Lochnit, Sebastian P. Galuska, Katrin Marcus, Barbara Sitek, Jens Klotsche, David Mengel, Sascha Neumann, Richard Dodel
Alzheimer's Dement. 2023 Jun 1. doi: 10.1002/alz.13124
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Humoral and cellular immune responses to repeated SARS-CoV-2 infection and vaccination in an individual living with HIV
Agit Simsek, Clara Bessen, Toni L. Meister, Doris Urlaub, Adriane Skaletz-Rorowski, Norbert H. Brockmeyer, Oliver Overheu, Anke Reinacher-Schick, Simon Faissner, Carsten Watzl, Stephanie Pfaender, Ingo Schmitz, Anja Potthoff, Carlos Plaza-Sirvent
J Eur Acad Dermatol Venereol. 2023 Mar 13. doi: 10.1111/jdv.19036
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A Reinvestigation of the Role of the Sorbic Acid Tail on the Antibacterial and Anti-Tuberculosis Properties of Moiramide B
Irina Kollmorgen, Nathalie Bachmann, Michael Dal Molin, Carsten Degenhart, Eldar Zent, Virkam Pareek, Uwe Koch, Jan Rybniker, Nils Metzler-Nolte, Raphael Stoll, Bert Klebl, Julia E. Bandow, Jürgen Scherkenbeck
ChemMedChem. 2023 Mar 8. doi: 10.1002/cmdc.202200631
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Quality Control—A Stepchild in Quantitative Proteomics: A Case Study for the Human CSF Proteome
Svitlana Rozanova, Julian Uszkoreit, Karin Schork, Bettina Serschnitzki, Martin Eisenacher, Lars Tönges, Katalin Barkovits-Boeddinghaus, Katrin Marcus
Biomolecules. 2023 Mar 7. doi: 10.3390/biom13030491
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Linear ubiquitination induces NEMO phase separation to activate NF-κB signaling
Simran Goel, Rosario Oliva, Sadasivam Jeganathan, Verian Bader, Laura J. Krause, Simon Kriegler, Isabelle D. Stender, Chadwick W. Christine, Ken Kakamura, Jan-Erik Hoffmann, Roland Winter, Jörg Tatzelt, Konstanze F. Winklhofer
Life Sci Alliance. 2023 Jan 31. doi: 0.26508/lsa.202201607
2022
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Fast and label-free automated detection of microsatellite status in early colon cancer using artificial intelligence integrated infrared imaging
Klaus Gerwert, Stephanie Schörner, Frederik Gro0erueschkamp, Anna-Lena Kraeft, David Schuhmacher, Carlo Sternemann, Inke S. Feder, Sarah Wisser, Celine Lugnier, Dirk Arnold, Christian Teschendorf, Lother Mueller, Nina TImmersfeld, Axel Mosig, Anke Reinacher-Schick, Andrea Tannapfel
European Journal of Cancer. 2022 Dec 23. doi: 10.1016/j.ejca.2022.12.026
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In-depth analysis of T cell immunity and antibody responses in heterologous prime-boost-boost vaccine regimens against SARS-CoV-2 and Omicron variant
Natalie Heinen, Corinna Sophie Marheinecke, Clara Bessen, Arture Blazquez-Navarro, Toralf Roch, Ulrik Stervbo, Moritz Anft, Carlos Plaza-Sirvent, Sandra Busse, Mara Klöhn, Jil Schrader, Elena Vidal Blanco, Doris Urlaub, Carsten Watzl, Markus Hoffmann, Stefan Pöhlmann, Matthias Tenbusch, Eike Steinmann, Daniel Todt, Carsten Hagenbeck, Gert Zimmer, Wolfgang Ekkehard Schmidt, Daniel Robert Quast, Nina Babel, Ingo Schmitz, Stephanie Pfaender
Front. Immunol. 2022 Dec 21. doi: 10.3389/fimmu.2022.1062210
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LUBAC assembles a ubiquitin signaling platform at mitochondria for signal amplification and transport of NF-κB to the nucleus
Zhixiao Wu, Lena A. Berlemann, Verian Bader, Dominik A. Sehr, Eva Dawin, Alberto Covallero, Jens Meschede, Lena Angersbach, Cathrin Showkat, Jonas B. Michaelis, Christian Münch, Bettina Rieger, Dmitry Namgaladze, Maria Georgina Herrera, Fabienne C. Fiesel, Wolfdieter Springer, Marta Mendes, Jennifer Stepien, Katalin Barkovits, Katrin Marcus, Albert Sickmann, Gunnar Dittmar, Karin B. Busch, Dietmar Riedel, Marisa Brini, Jörg Tatzelt, Tito Cali, Konstanze F. Winklhofer
EMBO J. 2022 Dec 15. doi: 10.15252/embj.2022112006
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Preserved T-cell response in anti-CD20-treated multiple sclerosis patients following SARS-CoV-2 vaccination
Simon Faissner, Neele Heitmann, Ricarda Rohling, Ulas Ceylan, Marielena Bongert, Carlos Plaza-Sirvent, Corinna Marheinecke, Xiomara Pedreiturria, Ilya Ayzenberg, Kerstin Hellwig, Ingo Schmitz, Stephanie Pfaender, Ralf Gold
Ther. Adv. Neorol. Disord. 2022 Dec 9. doi: 10.1177/17562864221141505
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Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway
Jifu Duan, Anja Hemschemeier, David J. Burr, Sven T. Stripp, Eckhard Hofmann, Thomas Happe
Angewandte Chemie. 2022 Dec 4. doi: 10.1002/anie.202216903
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Impact of SARS-CoV-2 vaccination on systemic immune responses in people living with HIV
Clara Bessen, Carlos Plaza-Sirvent, Agit Simsek, Jaydeep Bhat, Corinna Marheinecke, Doris Urlaub, Petra Bonowitz, Sandra Busse, Sabrina Schumann, Elena Vidal Blanco, Adriane Skaletz-Rorowski, Norbert H. Brockmeyer, Oliver Overheu, Anke Reinacher-Schick, Simon Faissner, Carsten Watzl, Stephanie Pfänder, Anja Potthoff, Ingo Schmitz
Front. Immunol. 2022 Dec 2, doi: 10.3389/fimmu.2022.1049070
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In vitro Assay to Evaluate Cation Transport of Ionophores
Huriye D. Unzun, Melissa Vázquez-Hernández, Julia E. Bandow, Thomas Günther-Pomorski
Bio-protocol. 2022 Nov 20. doi: 10.1002/pmic.202200061
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Heat Shock Protein Upregulation Supplemental to Complex mRNA Alterations in Autoimmune Glaucoma
Sabrina Reinehr, Armin Safaei, Pia Hrotegut, Annika Guntermann, Teresa Tsai, Stephan A. Hahn, Steffen Kösters, Carsten Theiss, Katrin Marcus, H. Burkhard Dick, Caroline May, Stephanie C. Joachim
Biomolecules. 2022 Oct 21. doi: 10.3390/biom12101538
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Characterization of three novel DyP‐type peroxidases from Streptomyces chartreusis NRRL 3882
Abdulkadir Yayci, Nathalie Bachmann, Tim Dirks, Eckhard Hofmann, Julia E. Bandow
Journal of Applied Microbiology. 2022 Oct 1, doi: 10.1111/jam.15707
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Plasma Proteomics Enable Differentiation of Lung Adenocarcinoma from Chronic Obstructive Pulmonary Disease (COPD)
Thilo Bracht, Daniel Kleefisch, Karin Schork, Kathrin E. Witzke, Weiqiang Chen, Malte Bayer, Jan Hovanec, Georg Johnen, Swetlana Meier, Yon-Dschun Ko, Thomas Behrens, Thomas Brüning, Jana Fassunke, Reinhard Buettner, Julian Uszkoreit, Michael Adamzik, Martin Eisenacher, Barbara Sitek
Int. J. Mol. Sci. 2022, Sep 24. doi: 10.3390/ijms231911242
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ROS scavengers decrease γH2ax spots in motor neuronal nuclei of ALS model mice in vitro
Maya Junghans, Felix John, Hilal Cihankaya, Daniel Schliebs, Konstanze F. Winklhofer, Verian Bader, Johann Matschke, Carsten Theiss, Veronika Matschke
Front. Cell. Neurosci. 22 Aug 31. doi: 10.3389/fncel.2022.963169
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Immune response in ofatumumab treated multiple sclerosis patients after SARS-CoV-2 vaccination
Simon Faissner, Neele Heitmann, Carlos Plaza-Sirvent, Paulina Trendelenburg, Ulas Ceylan, Jeremias Motte, Clara Bessen, Doris Urlaub, Carsten Watzl, Oliver Overheu, Anke Reinacher-Schick, Kerstin Hellwig, Stephanie Pfänder, Ingo Schmitz, Ingo Schmitz, Ralf Gold
Front. Immunol. 2022 Aug 31. doi: 10.3389/fimmu.2022.980526
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A ribavirin-induced ORF2 single-nucleotide variant produces defective hepatitis E virus particles with immune decoy function
Toni Luise Meister, Yannick Brüggemann, Maximilian N. Nocke, Rainer G. Ulrich, Jonas Schuhenn, Kathrin Sutter, Andre Gömer, Verian Bader, Konstanze F. Winklhofer, Ruth Broering, Lieven Verhoye, Philip Meuleman, Florian W. R. Vondran, Charline Camuzet, Laurence Cocquerel, Daniel Todt, Eike Steinmann
PNAS. 2022 Aug 15. doi: 10.1073/pnas.2202653119
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Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators
Vivian B. Brandenburg, Franz Narberhaus, Axel Mosig
PLoS Computational Biology. 2022 Jul 7. doi: 10.1371/journal.pcbi.1010240
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A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics
Nils Hoffmann, Gerhard Mayer, Canan Has, Dominik Kopczynski, Fadi Al Machot, Dominik Schwudke, Robert Ahrends, Katrin Marcus, Matrin Eisenacher, Michael Turewicz
Metabolites. 2022 Jun 23. doi: 10.3390/metabo12070584
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Transcriptome and Proteome Analysis in LUHMES Cells Overexpressing Alpha-Synuclein
Matthias Höllerhage, Markus Stepath, Michael Kohl, Kathy Pfeiffer, Oscar Wing ho Chua, Linghan Duan, Franziska Hopfner, Martin Eisenacher, Katrin Marcus, Günter U. Höglinger
Front. Neurol. 2022 Apr 11. doi: 10.3389/fneur.2022.787059
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A framework for falsifiable explanations of machine learning models with an application in computational pathology
David Schuhmacher, Stephanie Schöner, Claus Küpper, Frederik Großerueschkamp, Carlo Sternemann, Celine Lugnier, Anna-Lena Kraeft, Hendrik Jütte, Andrea Tannapfel, Anke Reinacher-Schick, Klaus Gerwert, Axel Mosig
Medical Image Analysis, Volume 82, 2022, 102594. DOI: 10.1016/j.media.2022.102594.
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Effects of 4-Br-A23187 on Bacillus subtilis cells and unilamellar vesicles reveal it to be a potent copper ionophore.
Christoph H R Senges, Helen L Warmuth, Melissa Vázquez-Hernández, Huriye Deniz Uzun, leonie Sagurna, Pascal Dietze, Claudia Schmidt, Brix Mücher, Stefan Herlitze, Ute Krämer, Ingo Ott, Thomas Günther-Pomorski, Julia E Bandow
Proteomics. 2022 Jun 4; e2200061. DOI: 10.1002/pmic.202200061
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Brevican, Neurocan, Tenascin-C, and Tenascin-R Act as Important Regulators of the Interplay Between Perineuronal Nets, Synaptic Integrity, Inhibitory Interneurons, and Otx2.
Cornelius Müller-Bühl, Jacqueline Reinhard, Lars Roll, Verian Bader, Konstanze F Winklhofer, Andreas Faissner
Front Cell Dev Biol. 2022 Jun 2;10:886527. doi: 10.3389/fcell.2022.886527.
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An increase in surface hydrophobicity mediates chaperone activity in N-chlorinated RidA.
Marharyta Varatnitskaya, Julia Fasel, Alexandra Müller, Natalie Lupilov, Yunlong Shi, Kristin Fuchs, Marco Krewing, Christoph Jung, Timo Jacob, Barbara Sitek, Julia E Bandow, Kate S Carroll, Eckhard Hofmann, Lars I Leichert.
Redox Biol. 2022 Jul;53:102332.doi: 10.1016/j.redox.2022.102332.
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Differential interferon-α subtype induced immune signatures are associated with suppression of SARS-CoV-2 infection.
Jonas Schuhenn, Toni Luise Meister, Daniel Todt, Thilo Bracht, Karin Schork, Jean-Noel Billaud, Carina Elsner, Natalie Heinen, Zehra Karakoese, Sibylle Haid, Sriram Kumar, Linda Brunotte, Martin Eisenacher, Yunyun Di, Jocelyne Lew, Darryl Falzarano, Jielang Chen, Zhenghong Yuan, Thomas Pietschmann, Bettina Wiegmann, Hendrik Übner, Christian Taube, Vu Thuy Khanh Le-Trilling, Mirko Trilling, Adalbert Krawczyk, Stephan Ludwig, Barbara Sitek, Eike Steinmann, Ulf Dittmer, Kerry J Lavender, Kathrin Sutter, Stephanie Pfänder.
Proc Natl Acad Sci U S A. 2022 Feb 22;119(8):e2111600119. doi: 10.1073/pnas.2111600119.
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The impact of the COVID-19 pandemic on non-COVID induced sepsis survival.
Matthias Unterberg, Tim Rahmel, Katharina Rump, Alexander Wolf, Helge Haberl, Alexander von Busch, Lars Bergmann, Thilo Bracht, Alexander Zarbock, Stefan Felix Ehrentraut, Christian Putensen, Frank Wapper, Thomas Köhler, Björn Ellger, Nina Babel, Ulrich Frey, Martin Eisenacher, Daniel Kleefisch, Katrin Marcus, Barbara Sitek, Michael Adamzik, Björn Koos, Hartmuth Nowak.
BMC Anesthesiol. 2022 Jan 5;22(1):12. doi: 10.1186/s12871-021-01547-8.
2021
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Adaptive Responses of Pseudomonas aeruginosa to Treatment with Antibiotics
Dominik Wüllner, Maren Gesper, Annika Haupt, Xiaofei Liang, Pei Zhou, Pascal Dietze, Franz Narberhaus, Julia E Bandow Antimicrob Agents Chemother. 2021 Nov 8. doi: 10.1128/AAC.00878-21
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Remodeling of the Fibrillation Pathway of α-Synuclein by Interaction with Antimicrobial Peptide LL-III.
Rosario Oliva, Sanjib K Mukherjee, Lena Ostermeier, Lilli A Pazurek, Simon Kriegler, Verian Bader, Daniel Prumbaum, Stefan Raunser, Konstanze F Winklhofer, Jörg Tatzelt, Roland Hermann Alfons Winter.
Chemistry. 2021 Jun 24. doi: 10.1002/chem.202101592.
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Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle.
Britta Eggers, Karin Schork, Michael Turewicz, Katalin Barkovits, Martin Eisenacher, Rolf Schröder, Christoph S Clemen, Katrin Marcus.
Proteomes. 2021 Jun 8;9(2):28. doi: 10.3390/proteomes9020028.
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The N-terminal domain of the prion protein is required and sufficient for liquid-liquid phase separation: A crucial role of the Aβ-binding domain.
Janine Kamps, Yu-Hsuan Lin, Rosario Oliva, Verian Bader, Roland Winter, Konstanze F Winklhofer, Jörg Tatzelt.
J Biol Chem. 2021 Jun 6;297(1):100860. doi: 10.1016/j.jbc.2021.100860.
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The Ras dimer structure.
Till Rudack, Christian Teuber, Marvin Scherlo, Jörn Güldenhaupt, Jonas Schartner, Mathias Lübben, Johann Klare, Klaus Gerwert, Carsten Kötting.
Chem Sci. 2021 May 4;12(23):8178-8189. doi: 10.1039/d1sc00957e.
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The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS.
Jonas Ahlers, Ellen M Adams, Verian Bader, Simone Pezzotti, Konstanze F Winklhofer, Jörg Tatzelt, Martina Havenith.
Biophys J. 2021 Apr 6;120(7):1266-1275. doi: 10.1016/j.bpj.2021.01.019. Epub 2021 Jan 28.
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Endoplasmic reticulum membrane receptors of the GET pathway are conserved throughout eukaryotes.
Lisa Yasmin Asseck, Dietmar Gerald Mehlhorn, Jhon Rivera Monroy, Martiniano Maria Ricardi, Holger Breuninger, Niklas Wallmeroth, Kenneth Wayne Berendzen, Minou Nowrousian, Shuping Xing, Blanche Schwappach, Martin Bayer, Christopher Grefen.
Proc Natl Acad Sci U S A. 2021 Jan 5;118(1):e2017636118. doi: 10.1073/pnas.2017636118.
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Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics.
Britta Eggers, Martin Eisenacher, Katrin Marcus, Julian Uszkoreit.
Methods Mol Biol. 2021;2228:307-325. doi: 10.1007/978-1-0716-1024-4_22.
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Time-resolved spectroscopic and electrophysiological data reveal insights in the gating mechanism of anion channelrhodopsin.
Max-Aylmer Dreier, Philipp Althoff, Mohamad Javad Norahan, Stefan Alexander Tennigkeit, Samir F El-Mashtoly, Mathias Lübben, Carsten Kötting, Till Rudack, Klaus Gerwert.
Commun Biol. 2021 May 14;4(1):578. doi: 10.1038/s42003-021-02101-5.
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Quantitative analysis of proteome dynamics in a mouse model of asthma.
Lukas Funke, Stefanie Gnipp, Maike Ahrens, Martin Eisenacher, Marcus Peters, Barbara Sitek, Thilo Bracht.
Clin Exp Allergy. 2021 Feb 7. doi: 10.1111/cea.13843. Online ahead of print.
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Quantum cascade laser-based infrared imaging as a label-free and automated approach to determine mutations in lung adenocarcinoma.
Nina Goertzen, Roberto Pappesch, Jana Fassunke, Thomas Brüning, Yon-Dschun Ko, Joachim Schmidt, Frederik Großerueschkamp, Reinhard Buettner, Klaus Gerwert.
Am J Pathol. 2021 May 15;S0002-9440(21)00197-8. doi: 10.1016/j.ajpath.2021.04.013. Online ahead of print.
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Screening for Microbial Metal-Chelating Siderophores for the Removal of Metal Ions from Solutions. Microorganisms.
Marika Hofmann, Thomas Heine, Luise Malik, Sarah Hofmann, Kristin Joffroy, Christoph Helmut Rudi Senges, Julia Elisabeth Bandow, Dirk Tischler.
2021 Jan 5;9(1):111. doi: 10.3390/microorganisms9010111.
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Differential Proteome Analysis Using 2D-DIGE.
Caroline May, Frederic Brosseron, Piotr Chartowski, Kristin Fuchs, Helmut E Meyer, Barbara Sitek, Katrin Marcus.
Methods Mol Biol. 2021;2228:77-84. doi: 10.1007/978-1-0716-1024-4_7.
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Proteome Analysis with Classical 2D-PAGE.
Caroline May, Frederic Brosseron, Kathy Pfeiffer, Kristin Fuchs, Helmut E Meyer, Barbara Sitek, Katrin Marcus.
Methods Mol Biol. 2021;2228:53-62. doi: 10.1007/978-1-0716-1024-4_5.
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Microsecond-Resolved Infrared Spectroscopy on Nonrepetitive Protein Reactions by Applying Caged Compounds and Quantum Cascade Laser Frequency Combs.
Mohamad Javad Norahan, Raphael Horvath, Nathalie Woitzik, Pierre Jouy, Florian Eigenmann, Klaus Gerwert, Carsten Kötting.
Anal Chem. 2021 May 4;93(17):6779-6783. doi: 10.1021/acs.analchem.1c00666. Epub 2021 Apr 21.
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Isolation and characterization of arsenic-binding siderophores from Rhodococcus erythropolis S43: role of heterobactin B and other heterobactin variants.
Gerardo Retamal-Morales, Christoph Helmut Rudi Senges, Manuel Stapf, Angel Olguín, Brenda Modak, Julia Elisabeth Bandow, Dirk Tischler, Michael Schlömann, Gloria Levicán.
Appl Microbiol Biotechnol. 2021 Feb;105(4):1731-1744. doi: 10.1007/s00253-021-11123-2. Epub 2021 Jan 29.
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Analysis of nationwide multimodal complex treatment and drug pump therapy in Parkinson's disease in times of COVID-19 pandemic in Germany.
Daniel Richter, Raphael Scherbaum, Dirk Bartig, Ralf Gold, Christos Krogias, Lars Tönges.
Parkinsonism Relat Disord. 2021 Apr;85:109-113. doi: 10.1016/j.parkreldis.2021.03.006. Epub 2021 Mar 18.
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Clinical Profiles and Mortality of COVID-19 Inpatients with Parkinson's Disease in Germany.
Raphael Scherbaum, Eun Hae Kwon, Daniel Richter, Dirk Bartig, Ralf Gold, Christos Krogias, Lars Tönges.
Mov Disord. 2021 May;36(5):1049-1057. doi: 10.1002/mds.28586. Epub 2021 May 4.
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A Propagated Skeleton Approach to High Throughput Screening of Neurite Outgrowth for In Vitro Parkinson's Disease Modelling.
Justus Schikora, Nina Kiwatrowski, Nils Förster, Leonie Selbach, Friederike Ostendorf, Frida Pallapies, Britta Hasse, Judith Metzdorf, Ralf Gold, Axel Mosig, Lars Tönges.
Cells. 2021 Apr 17;10(4):931. doi: 10.3390/cells10040931.
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Structural requirements for membrane binding of human guanylate-binding protein 1.
Linda Sistemich, Lyubomir Dimitrov Stanchev, Miriam Kutsch, Aurélien Roux, Thomas Günther Pomorski, Christian Herrmann.
FEBS J. 2021 Jan 6. doi: 10.1111/febs.15703. Online ahead of print.
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Hypochlorous acid-modified human serum albumin suppresses MHC class II - dependent antigen presentation in pro-inflammatory macrophages.
Agnes Ulfig, Verian Bader, Marharyta Varatnitskaya, Natalie Lupilov, Konstanze F Winklhofer, Lars I Leichert.
Redox Biol. 2021 Apr 20;43:101981. doi: 10.1016/j.redox.2021.101981. Online ahead of print.
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MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB.
Julian Uszkoreit, Dirk Winkelhardt, Katalin Barkovits, Maximilian Wulf, Sascha Roocke, Katrin Marcus, Martin Eisenacher.
J Proteome Res. 2021 Apr 2;20(4):2145-2150. doi: 10.1021/acs.jproteome.0c00967. Epub 2021 Mar 16.
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A safety cap protects hydrogenase from oxygen attack.
Martin Winkler, Jifu Duan, Andreas Rutz, Christina Felbek, Lisa Scholtysek, Oliver Lampret, Jan Jaenecke, Ulf-Peter Apfel, Gianfranco Gilardi, Francesca Valetti, Vincent Fourmond, Eckhard Hofmann, Christophe Léger, Thomas Happe.
Nat Commun. 2021 Feb 2;12(1):756. doi: 10.1038/s41467-020-20861-2.
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Application of Label-Free Proteomics for Quantitative Analysis of Urothelial Carcinoma and Cystitis Tissue.
Kathrin E Witzke, Frederik Großerueschkamp, Klaus Gerwert, Barbara Sitek.
Methods Mol Biol. 2021;2228:283-292. doi: 10.1007/978-1-0716-1024-4_20.
2020
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Blood Contamination in CSF and Its Impact on Quantitative Analysis of Alpha-Synuclein.
Katalin Barkovits, Niels Kruse, Andreas Linden, Lars Tönges, Kathy Pfeiffer, Brit Mollenhauer, Katrin Marcus
Cells 2020 Feb 5;9(2):370. doi: 10.3390/cells9020370.
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Toward noninvasive follow-up of low-risk bladder cancer - Rationale and concept of the UroFollow trial.
Natalya Benderska-Söder, Jan Hovanec, Beate Pesch, Peter J Goebell, Florian Roghmann, Joachim Noldus, Juri Rabinovich, Katharina Wichert, Jan Gleichenhagen, Heiko U Käfferlein, Christina U Köhler, Georg Johnen, Karoline Kernig, Oliver Hakenberg, Daniela Jahn, Tilman Todenhöfer, Arnulf Stenzl, Jochen Gleissner, Klaus Gerwert, Samir El-Mashtoly, Thomas Behrens, Thomas Brüning, Bernd J Schmitz-Dräger
Urol Oncol 2020 Mar 18;S1078-1439(20)30007-7. doi: 10.1016/j.urolonc.2020.01.006. Online ahead of print.
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TDP-43 as structure-based biomarker in amyotrophic lateral sclerosis
Léon Beyer, René Günther, Jan Christoph Koch, Stephan Klebe, Tim Hagenacker, Paul Lingor, Anne-Sophie Biesalski, Andreas Hermann, Andreas Nabers, Ralf Gold, Lars Tönges, Klaus Gerwert
Ann Clin Transl Neurol. 2020 Dec 2. doi: 10.1002/acn3.51256. Online ahead of print.
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Spatial proteomics revealed a CX 3 CL1-dependent crosstalk between the urothelium and relocated macrophages through IL-6 during an acute bacterial infection in the urinary bladder.
Jenny Bottek, Camille Soun, Julia K Lill, Akanksha Dixit, Stephanie Thiebes, Anna-Lena Beerlage, Marius Horstmann, Annett Urbanek, Heike Heuer, Julian Uszkoreit, Martin Eisenacher, Thilo Bracht, Barbara Sitek, Franziska Hoffmann, Nirojah Vijitha, Ferdinand von Eggeling, Daniel R Engel
Mucosal Immunol 2020 Jul;13(4):702-714. doi: 10.1038/s41385-020-0269-7. Epub 2020 Feb 28.
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Lipoprotein receptor loss in forebrain radial glia results in neurological deficits and severe seizures.
Ewa E Bres, Dina Safina, Julia Müller, Peter Bedner, Honghong Yang, Xavier Helluy, Olena Shchyglo, Stephan Jansen, Melanie D Mark, Alexander Esser, Christian Steinhäuser, Stefan Herlitze, Claus U Pietrzik, Swetlana Sirko, Denise Manahan-Vaughan, Andreas Faissner
Glia 2020 Jun 24. doi: 10.1002/glia.23869. Online ahead of print.
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Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism.
Alexander Duscha, Barbara Gisevius, Sarah Hirschberg, Nissan Yissachar, Gabriele I Stangl, Eva Eilers, Verian Bader, Stefanie Haase, Johannes Kaisler, Christina David, Ruth Schneider, Riccardo Troisi, Daniel Zent, Tobias Hegelmaier, Nikolaos Dokalis, Sara Gerstein, Sara Del Mare-Roumani, Sivan Amidror, Ori Staszewski, Gereon Poschmann, Kai Stühler, Frank Hirche, Andras Balogh, Stefan Kempa, Pascal Träger, Mario M Zaiss, Jacob Bak Holm, Megan G Massa, Henrik Bjørn Nielsen, Andreas Faissner, Carsten Lukas, Sören G Gatermann, Markus Scholz, Horst Przuntek, Marco Prinz, Sofia K Forslund, Konstanze F Winklhofer, Dominik N Müller, Ralf A Linker, Ralf Gold, Aiden Haghikia
Cell 2020 Mar 19;180(6):1067-1080.e16. doi: 10.1016/j.cell.2020.02.035. Epub 2020 Mar 10.
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New Approaches to Critical Illness Polyneuromyopathy: High-Resolution Neuromuscular Ultrasound Characteristics and Cytokine Profiling
Anna Lena Fisse, Caroline May, Jeremias Motte, Xiomara Pedreiturria, Thomas G K Breuer, Christiane Schneider-Gold, Katrin Marcus, Ralf Gold, Min-Suk Yoon, Kalliopi Pitarokoili
Neurocrit Care. 2020 Nov 24;1-14.doi: 10.1007/s12028-020-01148-2. Online ahead of print.
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miR-129-5p and miR-130a-3p Regulate VEGFR-2 Expression in Sensory and Motor Neurons during Development
Kevin Glaesel, Caroline May, Katrin Marcus, Veronika Matschke, Carsten Theiss, Verena Theis
Int J Mol Sci. 2020 May 28;21(11):3839. doi: 10.3390/ijms21113839.
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Parkinson's Disease Multimodal Complex Treatment (PD-MCT): Analysis of Therapeutic Effects and Predictors for Improvement.
Elke Hartelt, Raphael Scherbaum, Manuel Kinkel, Ralf Gold, Siegfried Muhlack, Lars Tönges
J Clin Med 2020 Jun 16;9(6):1874. doi: 10.3390/jcm9061874.
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SecY-mediated quality control prevents the translocation of non-gated porins
Sebastian Jung, Verian Bader, Ana Natriashvili, Hans-Georg Koch, Konstanze F Winklhofer, Jörg Tatzelt
Sci Rep. 2020 Oct 1;10(1):16347. doi: 10.1038/s41598-020-73185-y.
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Label-free, automated classification of microsatellite status in colorectal cancer by infrared imaging.
Angela Kallenbach-Thieltges, Frederik Großerueschkamp, Hendrik Jütte, Claus Kuepper, Anke Reinacher-Schick, Andrea Tannapfel, Klaus Gerwert
Sci Rep. 2020 Jun 23;10(1):10161. doi: 10.1038/s41598-020-67052-z.
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Agrobacterium tumefaciens Small Lipoprotein Atu8019 Is Involved in Selective Outer Membrane Vesicle (OMV) Docking to Bacterial Cells
Lisa Roxanne Knoke, Sara Abad Herrera, Katrin Götz, Bo Højen Justesen, Thomas Günther-Pomorski, Christiane Fritz, Sina Schäkermann, Julia Elisabeth Bandow, Meriyem Aktas
Front Microbiol. 2020 Jun 9;11:1228. doi: 10.3389/fmicb.2020.01228. eCollection 2020.
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CalibraCurve: A Tool for Calibration of Targeted MS-Based Measurements.
Michael Kohl, Markus Stepath, Thilo Bracht, Dominik A Megger, Barbara Sitek, Katrin Marcus, Martin Eisenacher
Proteomics 2020 Jun;20(11):e1900143. doi: 10.1002/pmic.201900143. Epub 2020 Mar 6.
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Correlates of polyneuropathy in Parkinson's disease
Eva Kühn, Paulina Averdunk, Sophie Huckemann, Katharina Müller, Anne-Sophie Biesalski, Florian Hof Zum Berge, Jeremias Motte, Anna Lena Fisse, Christiane Schneider-Gold, Ralf Gold, Kalliopi Pitarokoili, Lars Tönges
Ann Clin Transl Neurol. 2020 Oct;7(10):1898-1907. doi: 10.1002/acn3.51182. Epub 2020 Sep 17.
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The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases
Oliver Lampret, Jifu Duan, Eckhard Hofmann, Martin Winkler, Fraser A Armstrong, Thomas Happe
Proc Natl Acad Sci U S A. 2020 Aug 25;117(34):20520-20529. doi: 10.1073/pnas.2007090117. Epub 2020 Aug 13.
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Glutamate detection at the cellular level by means of polymer/enzyme multilayer modified carbon nanoelectrodes.
Miriam Marquitan, Melanie D Mark, Andrzej Ernst, Anna Muhs, Stefan Herlitze, Adrian Ruff, Wolfgang Schuhmann
J Mater Chem B 2020 Apr 29;8(16):3631-3639. doi: 10.1039/c9tb02461a.
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Polymer/enzyme-modified HF-etched carbon nanoelectrodes for single-cell analysis.
Miriam Marquitan, Adrian Ruff, Mattia Bramini, Stefan Herlitze, Melanie D Mark, Wolfgang Schuhmann
Bioelectrochemistry 2020 Jun;133:107487. doi: 10.1016/j.bioelechem.2020.107487. Epub 2020 Feb 19.
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The parkin-coregulated gene product PACRG promotes TNF signaling by stabilizing LUBAC.
Jens Meschede, Maria Šadić, Nikolas Furthmann, Tim Miedema, Dominik A Sehr, A Kathrin Müller-Rischart, Verian Bader, Lena A Berlemann, Anna Pilsl, Anita Schlierf, Katalin Barkovits, Barbara Kachholz, Katrin Rittinger, Fumiyo Ikeda, Katrin Marcus, Liliana Schaefer, Jörg Tatzelt, Konstanze F Winklhofer
Sci Signal 2020 Feb 4;13(617):eaav1256. doi: 10.1126/scisignal.aav1256.
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Functional metagenomics of the Thioredoxin superfamily
Sebastian Nilewski, Marharyta Varatnitskaya, Thorsten Masuch, Anna Kusnezowa, Manuela Gellert, Anne F Baumann, Natalie Lupilov, Witali Kusnezow, Markus-Hermann Koch, Martin Eisenacher, Mehmet Berkmen, Christopher Horst Lillig, Lars I Leichert
J Biol Chem. 2020 Dec 24;jbc.RA120.016350. doi: 10.1074/jbc.RA120.016350. Online ahead of print.
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Propionic Acid and Fasudil as Treatment Against Rotenone Toxicity in an In Vitro Model of Parkinson's Disease.
Friederike Ostendorf, Judith Metzdorf, Ralf Gold, Aiden Haghikia, Lars Tönges
Molecules 2020 May 28;25(11):2502. doi: 10.3390/molecules25112502.
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Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson's Disease
Sarah Plum, Britta Eggers, Stefan Helling, Markus Stepath, Carsten Theiss, Renata E P Leite, Mariana Molina, Lea T Grinberg, Peter Riederer, Manfred Gerlach, Caroline May, Katrin Marcus
Cells. 2020 Dec 2;9(12):2580. doi: 10.3390/cells9122580.
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Deep representation learning for domain adaptable classification of infrared spectral imaging data.
Arne P Raulf, Joshua Butke, Claus Küpper, Frederik Großerueschkamp, Klaus Gerwert, Axel Mosig
Bioinformatics 2020 Jan 1;36(1):287-294. doi: 10.1093/bioinformatics/btz505.
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A representation learning approach for recovering scatter-corrected spectra from Fourier-transform infrared spectra of tissue samples
Arne P Raulf, Joshua Butke, Lukas Menzen, Claus Küpper, Frederik Großerueschkamp, Klaus Gerwert, Axel Mosig
J Biophotonics. 2020 Dec 8;e202000385. doi: 10.1002/jbio.202000385. Online ahead of print.
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Lon Protease Removes Excess Signal Recognition Particle Protein in Escherichia coli.
Beate Sauerbrei, Jan Arends, Danja Schünemann, Franz Narberhaus
J Bacteriol 2020 Jun 25;202(14):e00161-20. doi: 10.1128/JB.00161-20. Print 2020 Jun 25.
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Cultivation dependent formation of siderophores by Gordonia rubripertincta CWB2
Ringo Schwabe, Christoph Helmut Rudi Senges, Julia Elisabeth Bandow, Thomas Heine, Henry Lehmann, Oliver Wiche, Michael Schlömann, Gloria Levicán, Dirk Tischler
Microbiol Res. 2020 Sep;238:126481. doi: 10.1016/j.micres.2020.126481. Epub 2020 May 26.
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Data on metal-chelating, -immobilisation and biosorption properties by Gordonia rubripertincta CWB2 in dependency on rare earth adaptation
Ringo Schwabe, Christoph Helmut Rudi Senges, Julia Elisabeth Bandow, Thomas Heine, Henry Lehmann, Oliver Wiche, Michael Schlömann, Gloria Levicán, Dirk Tischler
Data Brief. 2020 May 21;31:105739. doi: 10.1016/j.dib.2020.105739. eCollection 2020 Aug.
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Comparison of Proteomic Responses as Global Approach to Antibiotic Mechanism of Action Elucidation
Christoph H R Senges, Jennifer J Stepanek, Michaela Wenzel, Nadja Raatschen, Ümran Ay, Yvonne Märtens, Pascal Prochnow, Melissa Vázquez Hernández, Abdulkadir Yayci, Britta Schubert, Niklas B M Janzing, Helen L Warmuth, Martin Kozik, Jens Bongard, John N Alumasa, Bauke Albada, Maya Penkova, Tadeja Lukežič, Nohemy A Sorto, Nicole Lorenz, Reece G Miller, Bingyao Zhu, Martin Benda, Jörg Stülke, Sina Schäkermann, Lars I Leichert, Kathi Scheinpflug, Heike Brötz-Oesterhelt, Christian Hertweck, Jared T Shaw, Hrvoje Petković, Jean M Brunel, Kenneth C Keiler, Nils Metzler-Nolte, Julia E Bandow
Antimicrob Agents Chemother. 2020 Dec 16;65(1):e01373-20. doi: 10.1128/AAC.01373-20. Print 2020 Dec 16.
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Structural requirements for membrane binding of human guanylate-binding protein 1
Linda Sistemich, Lyubomir Dimitrov Stanchev, Miriam Kutsch, Aurélien Roux, Thomas Günther Pomorski, Christian Herrmann
FEBS J. 2021 Jan 6. doi: 10.1111/febs.15703. Online ahead of print.
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Systematic Comparison of Label-Free, SILAC, and TMT Techniques to Study Early Adaption toward Inhibition of EGFR Signaling in the Colorectal Cancer Cell Line DiFi.
Markus Stepath, Birgit Zülch, Abdelouahid Maghnouj, Karin Schork, Michael Turewicz, Martin Eisenacher, Stephan Hahn, Barbara Sitek, Thilo Bracht
J Proteome Res 2020 Feb 7;19(2):926-937. doi: 10.1021/acs.jproteome.9b00701. Epub 2020 Jan 14.
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Grayscale representation of infrared microscopy images by extended multiplicative signal correction for registration with histological images.
Stanislau Trukhan, Valeria Tafintseva, Kristin Tøndel, Frederik Großerueschkamp, Axel Mosig, Vassili Kovalev, Klaus Gerwert, Achim Kohler
J Biophotonics 2020 Apr 30;e201960223. doi: 10.1002/jbio.201960223. Online ahead of print.
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Lead-seq: transcriptome-wide structure probing in vivo using lead(II) ions.
Christian Twittenhoff, Vivian B Brandenburg, Francesco Righetti, Aaron M Nuss, Axel Mosig, Petra Dersch, Franz Narberhaus
Nucleic Acids Res 2020 Jul 9;48(12):e71. doi: 10.1093/nar/gkaa404.
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Closing the Gap for Electronic Short-Circuiting: Photosystem I Mixed Monolayers Enable Improved Anisotropic Electron Flow in Biophotovoltaic Devices
Panpan Wang, Anna Frank, Fangyuan Zhao, Julian Szczesny, João R C Junqueira, Sónia Zacarias, Adrian Ruff, Marc M Nowaczyk, Inês A C Pereira, Matthias Rögner, Felipe Conzuelo, Wolfgang Schuhmann
Angew Chem Int Ed Engl. 2021 Jan 25;60(4):2000-2006. doi: 10.1002/anie.202008958. Epub 2020 Nov 23.
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Activation leads to a significant shift in the intracellular redox homeostasis of neutrophil-like cells.
Kaibo Xie, Marharyta Varatnitskaya, Abdelouahid Maghnouj, Verian Bader, Konstanze F Winklhofer, Stephan Hahn, Lars I Leichert
Redox Biol 2020 Jan;28:101344. doi: 10.1016/j.redox.2019.101344. Epub 2019 Oct 13.
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Hospitalization Rates and Comorbidities in Patients with Progressive Supranuclear Palsy in Germany from 2010 to 2017.
Maria Angela Samis Zella, Dirk Bartig, Lennard Herrmann, Gesine Respondek, Günter Höglinger, Ralf Gold, Dirk Woitalla, Christos Krogias, Lars Tönges
J Clin Med 2020 Jul 31;9(8):E2454. doi: 10.3390/jcm9082454.
2019
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Fast and Noninvasive Diagnosis of Cervical Cancer by Coherent Anti-Stokes Raman Scattering.
Karim Aljakouch, Ziad Hilal, Ibrahim Daho, Martin Schuler, Sascha D Krauß, Hesham K Yosef, Johann Dierks, Axel Mosig, Klaus Gerwert, Samir F El-Mashtoly
Anal Chem 2019 Nov 5;91(21):13900-13906. doi: 10.1021/acs.analchem.9b03395. Epub 2019 Sep 17.
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Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.
Katalin Barkovits, Sandra Pacharra, Kathy Pfeiffer, Simone Steinbach, Martin Eisenacher, Katrin Marcus, Julian Uszkoreit
Mol Cell Proteomics 2020 Jan;19(1):181-197. doi: 10.1074/mcp.RA119.001714. Epub 2019 Nov 7
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CSF Sample Preparation for Data-Independent Acquisition.
Katalin Barkovits, Lars Tönges, Katrin Marcus
Methods Mol Biol 2019;2044:61-67. doi: 10.1007/978-1-4939-9706-0_4.
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Combination of Proteogenomics with Peptide De Novo Sequencing Identifies New Genes and Hidden Posttranscriptional Modifications.
B Blank-Landeshammer, I Teichert, R Märker, M Nowrousian, U Kück, A Sickmann
mBio 2019 Oct 15;10(5):e02367-19. doi: 10.1128/mBio.02367-19.
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Reversible Immuno-Infrared Sensor for the Detection of Alzheimer's Disease Related Biomarkers.
Brian Budde, Jonas Schartner, Lars Tönges, Carsten Kötting, Andreas Nabers, Klaus Gerwert
ACS Sens 2019 Jul 26;4(7):1851-1856. doi: 10.1021/acssensors.9b00631. Epub 2019 Jul 10.
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GTP Hydrolysis Without an Active Site Base: A Unifying Mechanism for Ras and Related GTPases.
Ana R Calixto, Cátia Moreira, Anna Pabis, Carsten Kötting, Klaus Gerwert, Till Rudack, Shina C L Kamerlin
J Am Chem Soc. 2019 Jul 10;141(27):10684-10701. doi: 10.1021/jacs.9b03193. Epub 2019 Jun 26.
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Let me infuse this for you - A way to solve the first YPIC challenge.
Britta Eggers, Sandra Pacharra, Martin Eisenacher, Katrin Marcus, Julian Uszkoreit
EuPA Open Proteom 2019 Aug 16;22-23:19-21. doi: 10.1016/j.euprot.2019.07.007. eCollection 2019 Mar.
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Laquinimod treatment in the R6/2 mouse model.
Gisa Ellrichmann, Alina Blusch, Oluwaseun Fatoba, Janine Brunner, Christiane Reick, Liat Hayardeny, Michael Hayden, Dominik Sehr, Konstanze F Winklhofer, Carsten Saft, Ralf Gold
Sci Rep 2019 Mar 15;9(1):4960. doi: 10.1038/s41598-018-37926-4.
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CaMello-XR enables visualization and optogenetic control of G q/11 signals and receptor trafficking in GPCR-specific domains.
Dennis Eickelbeck, Raziye Karapinar, Alexander Jack, Sandra T Suess, Ruxandra Barzan, Zohre Azimi, Tatjana Surdin, Michelle Grömmke, Melanie D Mark, Klaus Gerwert, Dirk Jancke, Petra Wahle, Katharina Spoida, Stefan Herlitze
Commun Biol 2019 Feb 14;2:60. doi: 10.1038/s42003-019-0292-y. eCollection 2019.
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Lamprey Parapinopsin ("UVLamP"): a Bistable UV-Sensitive Optogenetic Switch for Ultrafast Control of GPCR Pathways.
Dennis Eickelbeck, Till Rudack, Stefan Alexander Tennigkeit, Tatjana Surdin, Raziye Karapinar, Jan-Claudius Schwitalla, Brix Mücher, Maiia Shulman, Marvin Scherlo, Philipp Althoff, Melanie D Mark, Klaus Gerwert, Stefan Herlitze
Chembiochem 2020 Mar 2;21(5):612-617. doi: 10.1002/cbic.201900485. Epub 2019 Oct 30.
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Loss of Specific Active-Site Iron Atoms in Oxygen-Exposed [FeFe]-Hydrogenase Determined by Detailed X-ray Structure Analyses.
Julian Esselborn, Leonie Kertess, Ulf-Peter Apfel, Eckhard Hofmann, Thomas Happe
J Am Chem Soc 2019 Nov 6;141(44):17721-17728. doi: 10.1021/jacs.9b07808. Epub 2019 Oct 25.
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Noninvasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures-Gender matters.
Christina U Köhler, Nadine Bonberg, Maike Ahrens, Thomas Behrens, Jan Hovanec, Martin Eisenacher, Joachim Noldus, Thomas Deix, Katharina Braun, Henning Gohlke, Michael Walter, Andrea Tannapfel, Yu Tam, Florian Sommerer, Katrin Marcus, Karl-Heinz Jöckel, Raimund Erbel, Charles R Cantor, Heiko U Käfferlein, Thomas Brüning
Int J Cancer 2019 Nov 15;145(10):2861-2872. doi: 10.1002/ijc.32356. Epub 2019 May 16.
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Phosphorylation orchestrates the structural ensemble of the intrinsically disordered protein HMGA1a and modulates its DNA binding to the NFκB promoter.
Bastian Kohl, Xueyin Zhong, Christian Herrmann, Raphael Stoll
Nucleic Acids Res 2019 Dec 16;47(22):11906-11920. doi: 10.1093/nar/gkz614.
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The molecular chaperone Hsp33 is activated by atmospheric-pressure plasma protecting proteins from aggregation.
Marco Krewing, Jennifer Janina Stepanek, Claudia Cremers, Jan-Wilm Lackmann, Britta Schubert, Alexandra Müller, Peter Awakowicz, Lars I O Leichert, Ursula Jakob, Julia E Bandow
J R Soc Interface 2019 Jun 28;16(155):20180966. doi: 10.1098/rsif.2018.0966. Epub 2019 Jun 19.
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Fingolimod for Irradiation-Induced Neurodegeneration.
Judith Metzdorf, Zaynab Hobloss, Sibylle Schlevogt, Ilya Ayzenberg, Sarah Stahlke, Xiomara Pedreiturria, Steffen Haupeltshofer, Ralf Gold, Lars Tönges, Ingo Kleiter
Front Neurosci 2019 Jul 9;13:699. doi: 10.3389/fnins.2019.00699. eCollection 2019.
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Digital droplet PCR-based chimerism analysis for monitoring of hematopoietic engraftment after allogeneic stem cell transplantation.
Thomas Mika, Alexander Baraniskin, Swedlana Ladigan, Gerald Wulf, Sascha Dierks, Detlef Haase, Karin Schork, Michael Turewicz, Martin Eisenacher, Wolff Schmiegel, Roland Schroers, Susanne Klein-Scory
Int J Lab Hematol 2019 Oct;41(5):615-621. doi: 10.1111/ijlh.13073. Epub 2019 Jun 21.
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Monocytes-neutrophils-ratio as predictive marker for failure of first induction therapy in AML.
Thomas Mika, Swetlana Ladigan, Karin Schork, Michael Turewicz, Martin Eisenacher, Wolff Schmiegel, Roland Schroers, Alexander Baranis
Blood Cells Mol Dis 2019 Jul;77:103-108. doi: 10.1016/j.bcmd.2019.04.008. Epub 2019 Apr 18.
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Impairment of Motor Function Correlates with Neurometabolite and Brain Iron Alterations in Parkinson's Disease.
Beate Pesch, Swaantje Casjens, Dirk Woitalla, Shalmali Dharmadhikari, David A Edmondson, Maria Angela Samis Zella, Martin Lehnert, Anne Lotz, Lennard Herrmann, Siegfried Muhlack, Peter Kraus, Chien-Lin Yeh, Benjamin Glaubitz, Tobias Schmidt-Wilcke, Ralf Gold, Christoph van Thriel, Thomas Brüning, Lars Tönges, Ulrike Dydak
Cells 2019 Jan 29;8(2):96. doi: 10.3390/cells8020096.
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Dynamics of Parkinson's Disease Multimodal Complex Treatment in Germany from 2010⁻2016: Patient Characteristics, Access to Treatment, and Formation of Regional Centers.
Daniel Richter, Dirk Bartig, Siegfried Muhlack, Elke Hartelt, Raphael Scherbaum, Aristeides H Katsanos, Thomas Müller, Wolfgang Jost, Georg Ebersbach, Ralf Gold, Christos Krogias, Lars Tönges
Cells 2019 Feb 11;8(2):151. doi: 10.3390/cells8020151.
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Dynamics of device-based treatments for Parkinson's disease in Germany from 2010 to 2017: application of continuous subcutaneous apomorphine, levodopa-carbidopa intestinal gel, and deep brain stimulation.
Daniel Richter, Dirk Bartig , Wolfgang Jost, Christoph Jörges, Britta Stumpe, Ralf Gold, Christos Krogias, Lars Tönges
J Neural Transm (Vienna) 2019 Jul;126(7):879-888. doi: 10.1007/s00702-019-02034-8. Epub 2019 Jun 20.
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Lentiform Nucleus Hyperechogenicity in Parkinsonian Syndromes: A Systematic Review and Meta-Analysis with Consideration of Molecular Pathology.
Daniel Richter, Aristeidis H Katsanos, Christoph Schroeder, Georgios Tsivgoulis, George P Paraskevas, Thomas Müller, Andrei V Alexandrov, Ralf Gold, Lars Tönges, Christos Krogias
Cells 2019 Dec 18;9(1):2. doi: 10.3390/cells9010002.
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Parkinson's Disease Multimodal Complex Treatment improves motor symptoms, depression and quality of life.
Raphael Scherbaum, Elke Hartelt, Manuel Kinkel, Ralf Gold, Siegfried Muhlack, Lars Tönges
J Neurol 2020 Apr;267(4):954-965. doi: 10.1007/s00415-019-09657-7. Epub 2019 Dec 3.
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Protein Biomarker Discovery Using Human Blood Plasma Microparticles.
Raghda Saad Zaghloul Taleb, Pacint Moez, Doreen Younan, Martin Eisenacher, Matthias Tenbusch, Barbara Sitek, Thilo Bracht
Methods Mol Biol 2019;1959:51-64. doi: 10.1007/978-1-4939-9164-8_4.
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Design of an Ultrafast G Protein Switch Based on a Mouse Melanopsin Variant.
Stefan Alexander Tennigkeit, Raziye Karapinar, Till Rudack, Max-Aylmer Dreier, Philipp Althoff, Dennis Eickelbeck, Tatjana Surdin , Michelle Grömmke, Melanie D Mark, Katharina Spoida, Mathias Lübben, Udo Höweler, Stefan Herlitze, Klaus Gerwert
Chembiochem 2019 Jul 15;20(14):1766-1771. doi: 10.1002/cbic.201900110. Epub 2019 Jun 18.
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Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Escherichia coli Modulates Proteolysis of LpxC.
Nikolas Thomanek, Jan Arends, Claudia Lindemann, Katalin Barkovits, Helmut E Meyer, Katrin Marcus, Franz Narberhaus
Front Microbiol 2019 Jan 14;9:3285. doi: 10.3389/fmicb.2018.03285. eCollection 2018.
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A protein quality control pathway regulated by linear ubiquitination.
Eva M van Well, Verian Bader, Maria Patra, Ana Sánchez-Vicente, Jens Meschede, Nikolas Furthmann, Cathrin Schnack, Alina Blusch, Joseph Longworth, Elisabeth Petrasch-Parwez, Kohji Mori, Thomas Arzberger, Dietrich Trümbach, Lena Angersbach, Cathrin Showkat, Dominik A Sehr, Lena A Berlemann, Petra Goldmann, Albrecht M Clement, Christian Behl, Andreas C Woerner, Carsten Saft, Wolfgang Wurst, Christian Haass, Gisa Ellrichmann, Ralf Gold, Gunnar Dittmar, Mark S Hipp, F Ulrich Hartl, Jörg Tatzelt, Konstanze F Winklhofer
EMBO J 2019 May 2;38(9):e100730. doi: 10.15252/embj.2018100730. Epub 2019 Mar 18.
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Integrated Fourier Transform Infrared Imaging and Proteomics for Identification of a Candidate Histochemical Biomarker in Bladder Cancer.
Kathrin E Witzke, Frederik Großerueschkamp, Hendrik Jütte, Melanie Horn, Florian Roghmann, Nicolas von Landenberg, Thilo Bracht, Angela Kallenbach-Thieltges, Heiko Käfferlein, Thomas Brüning, Karin Schork, Martin Eisenacher, Katrin Marcus, Joachim Noldus, Andrea Tannapfel, Barbara Sitek, Klaus Gerwert
Am J Pathol 2019 Mar;189(3):619-631. doi: 10.1016/j.ajpath.2018.11.018. Epub 2019 Feb 12.
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Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction.
Kaibo Xie, Christina Bunse, Katrin Marcus, Lars I Leichert
Redox Biol 2019 Feb;21:101087. doi: 10.1016/j.redox.2018.101087.
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Extended Operational Lifetime of a Photosystem-Based Bioelectrode.
Fangyuan Zhao, Adrian Ruff, Matthias Rögner, Wolfgang Schuhmann, Felipe Conzuelo
J Am Chem Soc 2019 Apr 3;141(13):5102-5106. doi: 10.1021/jacs.8b13869. Epub 2019 Mar 21.
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Novel Immunotherapeutic Approaches to Target Alpha-Synuclein and Related Neuroinflammation in Parkinson's Disease.
Maria Angela Samis Zella, Judith Metzdorf, Friederike Ostendorf, Fabian Maass, Siegfried Muhlack, Ralf Gold, Aiden Haghikia, Lars Tönges
Cells 2019 Jan 31;8(2):105. doi: 10.3390/cells8020105.
2018
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Raman Microspectroscopic Evidence for the Metabolism of a Tyrosine Kinase Inhibitor, Neratinib, in Cancer Cells.
Aljakouch K, Lechtonen T, Yosef HK, Hammoud MK, Alsaidi W, Kötting C, Mügge C, Kourist R, El-Mashtoly SF, Gerwert K.
Angew Chem Int Ed Engl. 2018 Jun 11;57(24):7250-7254. doi: 10.1002/anie.201803394. Epub 2018 May 16.
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MicroRNA-30c as a novel diagnostic biomarker for primary and secondary B-cell lymphoma of the CNS.
Baraniskin A, Chomiak M, Ahle G, Gress T, Buchholz M, Turewicz M, Eisenacher M, Margold M, Schlegel U, Schmiegel W, Hahn S, Schroers R.
J Neurooncol. 2018 May;137(3):463-468. doi: 10.1007/s11060-018-2749-0. Epub 2018 Jan 11.
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Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.
Barkovits K, Linden A, Galozzi S, Schilde L, Pacharra S, Mollenhauer B, Stoepel N, Steinbach S, May C, Uszkoreit J, Eisenacher M, Marcus K.
J Proteome Res. 2018 Oct 5;17(10):3418-3430. doi: 10.1021/acs.jproteome.8b00308. Epub 2018 Sep 12.
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A Small Regulatory RNA Controls Cell Wall Biosynthesis and Antibiotic Resistance.
Borgmann J, Schäkermann S, Bandow JE, Narberhaus F.
MBio. 2018 Nov 13;9(6). pii: e02100-18. doi: 10.1128/mBio.02100-18.
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In memory of Achim Trebst (1929-2017): a pioneer of photosynthesis research.
Bothe H, Happe T, Trebst S, Rögner M.
Photosynth Res. 2018 May 16. doi: 10.1007/s11120-018-0516-x. [Epub ahead of print]
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Neutrophil-generated HOCl leads to non-specific thiol oxidation in phagocytized bacteria.
Degrossoli A, Müller A, Xie K, Schneider JF, Bader V, Winklhofer KF, Meyer AJ, Leichert LI.
Elife. 2018 Mar 6;7. pii: e32288. doi: 10.7554/eLife.32288.
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Crystallographic and spectroscopic assignment of the proton transfer pathway in [FeFe]-hydrogenases.
Duan J, Senger M, Esselborn J, Engelbrecht V, Wittkamp F, Apfel UP, Hofmann E, Stripp ST, Happe T, Winkler M.
Nat Commun. 2018 Nov 9;9(1):4726. doi: 10.1038/s41467-018-07140-x.
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Dimerization of the cellular prion protein inhibits propagation of scrapie prions.
Engelke AD, Gonsberg A, Thapa S, Jung S, Ulbrich S, Seidel R, Basu S, Multhaup G, Baier M, Engelhard M, Schätzl HM, Winklhofer KF, Tatzelt J.
J Biol Chem. 2018 May 25;293(21):8020-8031. doi: 10.1074/jbc.RA117.000990. Epub 2018 Apr 10.
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Ligand-Induced Conformational Changes in HSP90 Monitored Time Resolved and Label Free-Towards a Conformational Activity Screening for Drug Discovery.
Güldenhaupt J, Amaral M, Kötting C, Schartner J, Musil D, Frech M, Gerwert K.
Angew Chem Int Ed Engl. 2018 Jul 26;57(31):9955-9960. doi: 10.1002/anie.201802603. Epub 2018 Jul 3.
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Hierarchical deep convolutional neural networks combine spectral and spatial information for highly accurate Raman-microscopy-based cytopathology.
Krauß SD, Roy R, Yosef HK, Lechtonen T, El-Mashtoly SF, Gerwert K, Mosig A.
J Biophotonics. 2018 Oct;11(10):e201800022. doi: 10.1002/jbio.201800022. Epub 2018 Jul 5.
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Specific Substates of Ras To Interact with GAPs and Effectors: Revealed by Theoretical Simulations and FTIR Experiments.
Li Y, Zhang Y, Großerüschkamp F, Stephan S, Cui Q, Kötting C, Xia F, Gerwert K.
J Phys Chem Lett. 2018 Mar 15;9(6):1312-1317. doi: 10.1021/acs.jpclett.8b00342. Epub 2018 Mar 2.
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Next-Generation Trapping of Protease Substrates by Label-Free Proteomics.
Lindemann C, Thomanek N, Kuhlmann K, Meyer HE, Marcus K, Narberhaus F.
Methods Mol Biol. 2018;1841:189-206. doi: 10.1007/978-1-4939-8695-8_14.
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The protonation states of GTP and GppNHp in Ras proteins.
Mann D, Güldenhaupt J, Schartner J, Gerwert K, Kötting C.
J Biol Chem. 2018 Mar 16;293(11):3871-3879. doi: 10.1074/jbc.RA117.001110. Epub 2018 Jan 30.
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Visual tuning in the flashlight fish Anomalops katoptron to detect blue, bioluminescent light.
Mark MD, Donner M, Eickelbeck D, Stepien J, Nowrousian M, Kück U, Paris F, Hellinger J, Herlitze S.
PLoS One. 2018 Jul 11;13(7):e0198765. doi: 10.1371/journal.pone.0198765. eCollection 2018.
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Monitoring transient events in infrared spectra using local mode analysis.
Massarczyk M, Schlitter J, Kötting C, Rudack T, Gerwert K.
Proteins. 2018 Oct;86(10):1013-1019. doi: 10.1002/prot.25536. Epub 2018 Oct 29.
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Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments.
Mhaindarkar D, Gasper R, Lupilov N, Hofmann E, Leichert LI.
Commun Biol. 2018 Oct 17;1:171. doi: 10.1038/s42003-018-0167-7. eCollection 2018.
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Direct-acting antivirals-based therapy decreases hepatic fibrosis serum biomarker microfibrillar-associated protein 4 in hepatitis C patients.
Mölleken C, Ahrens M, Schlosser A, Dietz J, Eisenacher M, Meyer HE, Schmiegel W, Holmskov U, Sarrazin C, Sorensen GL, Sitek B, Bracht T.
Clin Mol Hepatol. 2018 Nov 19. doi: 10.3350/cmh.2018.0029. [Epub ahead of print]
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Label-free identification of myopathological features with coherent anti-Stokes Raman scattering.
Niedieker D, Grosserüschkamp F, Schreiner A, Barkovits K, Kötting C, Marcus K, Gerwert K, Vorgerd M.
Muscle Nerve. 2018 Sep;58(3):456-459. doi: 10.1002/mus.26140. Epub 2018 May 17.
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Prospective Study of the Clinical, Electrophysiologic, and Sonographic Characteristics of Oxaliplatin-Induced Neuropathy.
Pitarokoili K, Höffken N, Lönneker N, Fisse AL, Trampe N, Gold R, Reinacher-Schick A, Yoon MS.
J Neuroimaging. 2019 Jan;29(1):133-139. doi: 10.1111/jon.12557. Epub 2018 Sep 10.
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High-Resolution Nerve Ultrasound and Electrophysiological Findings in Restless Legs Syndrome.
Pitarokoili K, Fels M, Kerasnoudis A, Tönges L, Gold R, Yoon MS.
J Neuroimaging. 2018 Sep;28(5):506-514. doi: 10.1111/jon.12520. Epub 2018 May 11.
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Brainstem Raphe Alterations in TCS: A Biomarker for Depression and Apathy in Parkinson's Disease Patients.
Richter D, Woitalla D, Muhlack S, Gold R, Tönges L, Krogias C.
Front Neurol. 2018 Aug 7;9:645. doi: 10.3389/fneur.2018.00645. eCollection 2018.
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His-ligation to the [4Fe-4S] sub-cluster tunes the catalytic bias of [FeFe] hydrogenase.
Rodríguez-Maciá P, Kertess L, Burnik J, Birrell JA, Hofmann E, Lubitz W, Happe T, Rüdiger O.
J Am Chem Soc. 2018 Dec 14. doi: 10.1021/jacs.8b11149. [Epub ahead of print]
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Highly stable protein immobilization via maleimido-thiol chemistry to monitor enzymatic activity.
Schartner J, Güldenhaupt J, Katharina Gaßmeyer S, Rosga K, Kourist R, Gerwert K, Kötting C.
Analyst. 2018 May 15;143(10):2276-2284. doi: 10.1039/c8an00301g.
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Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research.
Schilde LM, Kösters S, Steinbach S, Schork K, Eisenacher M, Galozzi S, Turewicz M, Barkovits K, Mollenhauer B, Marcus K, May C.
PLoS One. 2018 Nov 29;13(11):e0206478. doi: 10.1371/journal.pone.0206478. eCollection 2018.
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Allosteric Activation of GDP-Bound Ras Isoforms by Bisphenol Derivative Plasticisers.
Schöpel M, Shkura O, Seidel J, Kock K, Zhong X, Löffek S, Helfrich I, Bachmann HS, Scherkenbeck J, Herrmann C, Stoll R.
Int J Mol Sci. 2018 Apr 10;19(4). pii: E1133. doi: 10.3390/ijms19041133.
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Breakthrough treatment with bortezomib for a patient with anti-NMDAR encephalitis.
Schroeder C, Back C, Koc Ü, Strassburger-Krogias K, Reinacher-Schick A, Gold R, Haghikia A.
Clin Neurol Neurosurg. 2018 Sep;172:24-26. doi: 10.1016/j.clineuro.2018.06.005. Epub 2018 Jun 23.
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The transcription factor PRO44 and the histone chaperone ASF1 regulate distinct aspects of multicellular development in the filamentous fungus Sordaria macrospora.
Schumacher DI, Lütkenhaus R, Altegoer F, Teichert I, Kück U, Nowrousian M.
BMC Genet. 2018 Dec 13;19(1):112. doi: 10.1186/s12863-018-0702-z.
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The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE.
Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2490-2495. doi: 10.1073/pnas.1715713115. Epub 2018 Feb 20.
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[Characteristics and dynamics of inpatient treatment of patients with Parkinson's disease in Germany : Analysis of 1.5 million patient cases from 2010 to 2015]
Tönges L, Bartig D, Muhlack S, Jost W, Gold R, Krogias C.
Nervenarzt. 2018 Aug 6. doi: 10.1007/s00115-018-0590-5. [Epub ahead of print]
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Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer's disease.
Ulbrich S, Janning P, Seidel R, Matschke J, Gonsberg A, Jung S, Glatzel M, Engelhard M, Winklhofer KF, Tatzelt J.
PLoS One. 2018 May 23;13(5):e0197659. doi: 10.1371/journal.pone.0197659. eCollection 2018.
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Protein inference using PIA workflows and PSI standard file formats.
Uszkoreit J, Perez-Riverol Y, Eggers B, Marcus K, Eisenacher M.
J Proteome Res. 2018 Nov 26. doi: 10.1021/acs.jproteome.8b00723. [Epub ahead of print]
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Rational redesign of the ferredoxin-NADP+-oxido-reductase/ferredoxin-interaction for photosynthesis-dependent H2-production.
Wiegand K, Winkler M, Rumpel S, Kannchen D, Rexroth S, Hase T, Farès C, Happe T, Lubitz W, Rögner M.
Biochim Biophys Acta Bioenerg. 2018 Apr;1859(4):253-262. doi: 10.1016/j.bbabio.2018.01.006. Epub 2018 Jan 31.
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Emerging Immunotherapies for Parkinson Disease.
Zella SMA, Metzdorf J, Ciftci E, Ostendorf F, Muhlack S, Gold R, Tönges L.
Neurol Ther. 2018 Dec 11. doi: 10.1007/s40120-018-0122-z. [Epub ahead of print]
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Landscape of pain in Parkinson's disease: impact of gender differences.
Zella MAS, May C, Müller T, Ahrens M, Tönges L, Gold R, Marcus K, Woitalla D.
Neurol Res. 2018 Oct 12:1-11. doi: 10.1080/01616412.2018.1531208. [Epub ahead of print]
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Light-induced formation of partially reduced oxygen species limits the lifetime of photosystem 1-based biocathodes.
Zhao F, Hardt S, Hartmann V, Zhang H, Nowaczyk MM, Rögner M, Plumeré N, Schuhmann W, Conzuelo F.
Nat Commun. 2018 May 17;9(1):1973. doi: 10.1038/s41467-018-04433-z.
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The Structure in Solution of Fibronectin Type III Domain 14 Reveals Its Synergistic Heparin Binding Site.
hong X, Arnolds O, Krenczyk O, Gajewski J, Pütz S, Herrmann C, Stoll R.
Biochemistry. 2018 Oct 23;57(42):6045-6049. doi: 10.1021/acs.biochem.8b00771. Epub 2018 Oct 11.
2017
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Membrane Remodeling by a Bacterial Phospholipid-Methylating Enzyme.
Danne L, Aktas M, Unger A, Linke WA, Erdmann R, Narberhaus F.
MBio. 2017 Feb 14;8(1). pii: e02082-16. doi: 10.1128/mBio.02082-16
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Dissection of membrane-binding and -remodeling regions in two classes of bacterial phospholipid N-methyltransferases.
Danne L, Aktas M, Grund N, Bentler T, Erdmann R, Narberhaus F.
Biochim Biophys Acta. 2017 Dec;1859(12):2279-2288. doi: 10.1016/j.bbamem.2017.09.013. Epub 2017 Sep 11.
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One gene, two proteins: coordinated production of a copper chaperone by differential transcript formation and translational frameshifting in Escherichia coli.
Drees SL, Klinkert B, Helling S, Beyer DF, Marcus K, Narberhaus F, Lübben M.
Mol Microbiol. 2017 Nov;106(4):635-645. doi: 10.1111/mmi.13841. Epub 2017 Oct 6.
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Laquinimod treatment in the R6/2 mouse model.
Ellrichmann G, Blusch A, Fatoba O, Brunner J, Hayardeny L, Hayden M, Sehr D, Winklhofer KF, Saft C, Gold R.
Sci Rep. 2017 Jul 10;7(1):4947. doi: 10.1038/s41598-017-04990-1.
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Distinct Features of Cyanophage-encoded T-type Phycobiliprotein Lyase ΦCpeT: THE ROLE OF AUXILIARY METABOLIC GENES.
Gasper R, Schwach J, Hartmann J, Holtkamp A, Wiethaus J, Riedel N, Hofmann E, Frankenberg-Dinkel N.
J Biol Chem. 2017 Feb 24;292(8):3089-3098. doi: 10.1074/jbc.M116.769703
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Common mechanisms of catalysis in small and heterotrimeric GTPases and their respective GAPs.
Gerwert K, Mann D, Kötting C.
Biol Chem. 2017 May 1;398(5-6):523-533. doi: 10.1515/hsz-2016-0314
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The Sec61/SecY complex is inherently deficient in translocating intrinsically disordered proteins.
Gonsberg A, Jung S, Ulbrich S, Origi A, Ziska A, Baier M, Koch HG, Zimmermann R, Winklhofer KF, Tatzelt J.
J Biol Chem. 2017 Oct 30. pii: jbc.M117.788067. doi: 10.1074/jbc.M117.788067.
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Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics.
Großerueschkamp F, Bracht T, Diehl HC, Kuepper C, Ahrens M, Kallenbach-Thieltges A, Mosig A, Eisenacher M, Marcus K, Behrens T, Brüning T, Theegarten D, Sitek B, Gerwert K.
Sci Rep. 2017 Mar 30;7:44829. doi: 10.1038/srep44829
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Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis.
Güttsches AK, Brady S, Krause K, Maerkens A, Uszkoreit J, Eisenacher M, Schreiner A, Galozzi S, Mertens-Rill J, Tegenthoff M, Holton JL, Harms MB, Lloyd TE, Vorgerd M, Weihl CC, Marcus K, Kley RA.
Ann Neurol. 2017 Feb;81(2):227-239. doi: 10.1002/ana.24847. Epub 2017 Jan 27.
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Protective effects on the retina after ranibizumab treatment in an ischemia model.
Joachim SC, Renner M, Reinhard J, Theiss C, May C, Lohmann S, Reinehr S, Stute G, Faissner A, Marcus K, Dick HB.
PLoS One. 2017 Aug 11;12(8):e0182407. doi: 10.1371/journal.pone.0182407
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Annexin A10 optimally differentiates between intrahepatic cholangiocarcinoma and hepatic metastases of pancreatic ductal adenocarcinoma: a comparative study of immunohistochemical markers and panels.
Kälsch J, Padden J, Bertram S, Pott LL, Reis H, Westerwick D, Schaefer CM, Sowa JP, Möllmann D, Fingas C, Dechȇne A, Sitek B, Eisenacher M, Canbay A, Ahrens M, Baba HA.
Virchows Arch. 2017 May;470(5):537-543. doi: 10.1007/s00428-017-2114-2. Epub 2017 Mar 29.
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Helional-induced activation of human olfactory receptor 2J3 promotes apoptosis and inhibits proliferation in a non-small-cell lung cancer cell line.
Kalbe B, Schulz VM, Schlimm M, Philippou S, Jovancevic N, Jansen F, Scholz P, Lübbert H, Jarocki M, Faissner A, Hecker E, Veitinger S, Tsai T, Osterloh S, Hatt H.
Eur J Cell Biol. 2017 Jan;96(1):34-46. doi: 10.1016/j.ejcb.2016.11.004
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Chalcogenide substitution in the [2Fe] cluster of [FeFe]-hydrogenases conserves high enzymatic activity.
Kertess L, Wittkamp F, Sommer C, Esselborn J, Rüdiger O, Reijerse EJ, Hofmann E, Lubitz W, Winkler M, Happe T, Apfel UP.
Dalton Trans. 2017 Dec 12;46(48):16947-16958. doi: 10.1039/c7dt03785f.
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Strategies in relative and absolute quantitative mass spectrometry based proteomics.
Lindemann C, Thomanek N, Hundt F, Lerari T, Meyer HE, Wolters D, Marcus K.
Biol Chem. 2017 May 1;398(5-6):687-699. doi: 10.1515/hsz-2017-0104
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Elucidation of Single Hydrogen Bonds in GTPases via Experimental and Theoretical Infrared Spectroscopy.
Mann D, Höweler U, Kötting C, Gerwert K.
Biophys J. 2017 Jan 10;112(1):66-77. doi: 10.1016/j.bpj.2016.11.3195
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Local Mode Analysis: Decoding IR Spectra by Visualizing Molecular Details.
Massarczyk M, Rudack T, Schlitter J, Kuhne J, Kötting C, Gerwert K.
J Phys Chem B. 2017 Apr 20;121(15):3483-3492. doi: 10.1021/acs.jpcb.6b09343
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A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects.
Mayer G, Quast C, Felden J, Lange M, Prinz M, Pühler A, Lawerenz C, Scholz U, Glöckner FO, Müller W, Marcus K, Eisenacher M.
Brief Bioinform. 2017 Oct 30. doi: 10.1093/bib/bbx140.
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One Sample, One Shot - Evaluation of sample preparation protocols for the mass spectrometric proteome analysis of human bile fluid without extensive fractionation.
Megger DA, Padden J, Rosowski K, Uszkoreit J, Bracht T, Eisenacher M, Gerges C, Neuhaus H, Schumacher B, Schlaak JF, Sitek B.
J Proteomics. 2017 Feb 10;154:13-21. doi: 10.1016/j.jprot.2016.11.021.
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Raman fiber-optical method for colon cancer detection: Cross-validation and outlier identification approach.
Petersen D, Naveed P, Ragheb A, Niedieker D, El-Mashtoly SF, Brechmann T, Kötting C, Schmiegel WH, Freier E, Pox C, Gerwert K.
Spectrochim Acta A Mol Biomol Spectrosc. 2017 Jun 15;181:270-275. doi: 10.1016/j.saa.2017.03.054
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Severe refractory CIDP: a case series of 10 patients treated with bortezomib.
Pitarokoili K, Yoon MS, Kröger I, Reinacher-Schick A, Gold R, Schneider-Gold C.
J Neurol. 2017 Sep; 264(9):2010-2020. doi: 10.1007/s00415-017-8599-4. Epub 2017 Aug 23.
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Coronal Transcranial Sonography and M-Mode Tremor Frequency Determination in Parkinson's Disease and Essential Tremor.
Richter D, Woitalla D, Muhlack S, Gold R, Tönges L, Krogias C.
J Neuroimaging. 2017 Sep;27(5):524-530. doi: 10.1111/jon.12441. Epub 2017 Apr 20.
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An ATR-FTIR Sensor Unraveling the Drug Intervention of Methylene Blue, Congo Red, and Berberine on Human Tau and Aβ.
Schartner J, Nabers A, Budde B, Lange J, Hoeck N, Wiltfang J, Kötting C, Gerwert K.
ACS Med Chem Lett. 2017 Jun 11;8(7):710-714. doi: 10.1021/acsmedchemlett.7b00079
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Blood-based detection of RAS mutations to guide anti-EGFR therapy in colorectal cancer patients: concordance of results from circulating tumor DNA and tissue-based RAS testing.
Schmiegel W, Scott RJ, Dooley S, Lewis W, Meldrum CJ, Pockney P5, Draganic B, Smith S5, Hewitt C, Philimore H, Lucas A, Shi E, Namdarian K, Chan T, Acosta D, Ping-Chang S, Tannapfel A, Reinacher-Schick A, Uhl W, Teschendorf C, Wolters H, Stern J, Viebahn R, Friess H, Janssen KP, Nitsche U, Slotta-Huspenina J, Pohl M, Vangala D, Baraniskin A, Dockhorn-Dworniczak B, Hegewisch-Becker S, Ronga P, Edelstein DL, Jones FS, Hahn S, Fox SB.
Mol Oncol. 2017 Feb;11(2):208-219. doi: 10.1002/1878-0261.12023
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Bortezomib in severe MuSK-antibody positive myasthenia gravis: first clinical experience.
Schneider-Gold C, Reinacher-Schick A, Ellrichmann G, Gold R.
Ther Adv Neurol Disord. 2017 Oct;10(10):339-341. doi: 10.1177/1756285617721093. Epub 2017 Jul 26.
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Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics. Microbiome.
Sukul P, Schäkermann S, Bandow JE, Kusnezowa A, Nowrousian M, Leichert LI.
Microbiome. 2017 Mar 3;5(1):28. doi: 10.1186/s40168-017-0247-9
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Quantitative proteome analysis of plasma microparticles for the characterization of HCV-induced hepatic cirrhosis and hepatocellular carcinoma.
Taleb RSZ, Moez P, Younan D, Eisenacher M, Tenbusch M, Sitek B, Bracht T.
Proteomics Clin Appl. 2017 Dec;11(11-12). doi: 10.1002/prca.201700014. Epub 2017 Jul 10.
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RNA Editing During Sexual Development Occurs in Distantly Related Filamentous Ascomycetes.
Teichert I, Dahlmann TA, Kück U, Nowrousian M.
Genome Biol Evol. 2017 Apr 1;9(4):855-868. doi: 10.1093/gbe/evx052
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New insights from an old mutant: SPADIX4 governs fruiting body development but not hyphal fusion in Sordaria macrospora.
Teichert I, Lutomski M, Märker R, Nowrousian M, Kück U.
Mol Genet Genomics. 2017 Feb;292(1):93-104. doi: 10.1007/s00438-016-1258-0
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BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication.
Turewicz M, Kohl M, Ahrens M, Mayer G, Uszkoreit J, Naboulsi W, Bracht T, Megger DA, Sitek B, Marcus K, Eisenacher M.
J Biotechnol. 2017 Nov 10;261:116-125. doi: 10.1016/j.jbiotec.2017.06.005. Epub 2017 Jun 9.
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Accumulating the hydride state in the catalytic cycle of [FeFe]-hydrogenases.
Winkler M, Senger M, Duan J, Esselborn J, Wittkamp F, Hofmann E, Apfel UP, Stripp ST, Happe T.
Nat Commun. 2017 Jul 19;8:16115. doi: 10.1038/ncomms16115
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Dynamical Binding Modes Determine Agonistic and Antagonistic Ligand Effects in the Prostate-Specific G-Protein Coupled Receptor (PSGR).
Wolf S, Jovancevic N, Gelis L, Pietsch S, Hatt H, Gerwert K.
Sci Rep. 2017 Nov 22;7(1):16007. doi: 10.1038/s41598-017-16001-4.
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Noninvasive Diagnosis of High-Grade Urothelial Carcinoma in Urine by Raman Spectral Imaging.
Yosef HK, Krauß SD, Lechtonen T, Jütte H, Tannapfel A, Käfferlein HU, Brüning T, Roghmann F, Noldus J, Mosig A, El-Mashtoly SF, Gerwert K.
Anal Chem. 2017 Jun 20;89(12):6893-6899. doi: 10.1021/acs.analchem.7b01403
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A novel versatile microbiosensor for local hydrogen detection by means of scanning photoelectrochemical microscopy.
Zhao F, Conzuelo F, Hartmann V, Li H, Stapf S, Nowaczyk MM, Rögner M, Plumeré N, Lubitz W, Schuhmann W.
Biosens Bioelectron. 2017 Aug 15;94:433-437. doi: 10.1016/j.bios.2017.03.037
2016
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In vivo trapping of FtsH substrates by label-free quantitative proteomics. Proteomics.
Arends J, Thomanek N, Kuhlmann K, Marcus K, Narberhaus F.
Proteomics. 2016 Dec;16(24):3161-3172. doi: 10.1002/pmic.201600316.
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Bortezomib Treatment for Patients With Anti-N-Methyl-d-Aspartate Receptor Encephalitis.
Behrendt V, Krogias C, Reinacher-Schick A, Gold R, Kleiter I.
JAMA Neurol. 2016 Oct 1;73(10):1251-1253. doi: 10.1001/jamaneurol.2016.2588.
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Evaluation of the biomarker candidate MFAP4 for non-invasive assessment of hepatic fibrosis in hepatitis C patients.
Bracht T, Mölleken C, Ahrens M, Poschmann G, Schlosser A, Eisenacher M, Stühler K, Meyer HE, Schmiegel WH, Holmskov U, Sorensen GL, Sitek B.
J Transl Med. 2016 Jul 4;14(1):201. doi: 10.1186/s12967-016-0952-3.
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Amphiphysin-positive paraneoplastic myelitis and stiff-person syndrome. Neurol Neuroimmunol Neuroinflamm.
Faissner S, Lukas C, Reinacher-Schick A, Tannapfel A, Gold R, Kleiter I.
2016 Sep 28;3(6):e285. eCollection 2016.
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Unraveling the Phosphocholination Mechanism of the Legionella pneumophila Enzyme AnkX.
Gavriljuk K, Schartner J, Seidel H, Dickhut C, Zahedi RP, Hedberg C, Kötting C, Gerwert K.
Biochemistry. 2016 Aug 9;55(31):4375-85. doi: 10.1021/acs.biochem.6b00524. Epub 2016 Jul 27
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Helional-induced activation of human olfactory receptor 2J3 promotes apoptosis and inhibits proliferation in a non-small-cell lung cancer cell line.
Kalbe B, Schulz VM, Schlimm M, Philippou S, Jovancevic N, Jansen F, Scholz P, Lübbert H, Jarocki M, Faissner A, Hecker E, Veitinger S, Tsai T, Osterloh S, Hatt H.
Eur J Cell Biol. 2016 Dec 5. pii: S0171-9335(16)30281-3. doi: 10.1016/j.ejcb.2016.11.004. [Epub ahead of print]
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Mechanism of the intrinsic arginine finger in heterotrimeric G proteins.
Mann D, Teuber C, Tennigkeit SA, Schröter G, Gerwert K, Kötting C.
Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8041-E8050. Epub 2016 Nov 28.
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Functional characterization of the ectopically expressed olfactory receptor 2AT4 in human myelogenous leukemia.
Manteniotis S, Wojcik S, Brauhoff P, Möllmann M, Petersen L, Göthert JR, Schmiegel W, Dührsen U, Gisselmann G, Hatt H.
Cell Death Discov. 2016 Jan 25;2:15070. doi: 10.1038/cddiscovery.2015.70. eCollection 2016.
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Outcome according to KRAS-, NRAS- and BRAF-mutation as well as KRAS mutation variants: pooled analysis of five randomized trials in metastatic colorectal cancer by the AIO colorectal cancer study group.
Modest DP, Ricard I, Heinemann V, Hegewisch-Becker S, Schmiegel W, Porschen R, Stintzing S, Graeven U, Arnold D, von Weikersthal LF, Giessen-Jung C, Stahler A, Schmoll HJ, Jung A, Kirchner T, Tannapfel A, Reinacher-Schick A.
Ann Oncol. 2016 Sep;27(9):1746-53. doi: 10.1093/annonc/mdw261. Epub 2016 Jun 29.
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MFAP4: a candidate biomarker for hepatic and pulmonary fibrosis?
Mölleken C, Poschmann G, Bonella F, Costabel U, Sitek B, Stühler K, Meyer HE, Schmiegel WH, Marcussen N, Helmer M, Nielsen O, Hansen S, Schlosser A, Holmskov U, Sorensen GL.
Sarcoidosis Vasc Diffuse Lung Dis. 2016 Mar 29;33(1):41-50.
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Allicin Induces Thiol Stress in Bacteria through S-Allylmercapto Modification of Protein Cysteines.
Müller A, Eller J, Albrecht F, Prochnow P, Kuhlmann K, Bandow JE, Slusarenko AJ, Leichert LI.
J Biol Chem. 2016 May 27;291(22):11477-90. doi: 10.1074/jbc.M115.702308. Epub 2016 Mar 23.
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Amyloid-β-Secondary Structure Distribution in Cerebrospinal Fluid and Blood Measured by an Immuno-Infrared-Sensor: A Biomarker Candidate for Alzheimer's Disease.
Nabers A, Ollesch J, Schartner J, Kötting C, Genius J, Hafermann H, Klafki H, Gerwert K, Wiltfang J.
Anal Chem. 2016 Mar 1;88(5):2755-62. doi: 10.1021/acs.analchem.5b04286. Epub 2016 Feb 16.
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[FeFe]-Hydrogenase with Chalcogenide Substitutions at the H-Cluster Maintains Full H2 Evolution Activity.
Noth J, Esselborn J, Güldenhaupt J, Brünje A, Sawyer A, Apfel UP, Gerwert K, Hofmann E, Winkler M, Happe T.
Angew Chem Int Ed Engl. 2016 Jul 11;55(29):8396-400. doi: 10.1002/anie.201511896. Epub 2016 May 23.
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Virtual staining of colon cancer tissue by label-free Raman micro-spectroscopy.
Petersen D, Mavarani L, Niedieker D, Freier E, Tannapfel A, Kötting C, Gerwert K, El-Mashtoly SF.
Analyst. 2016 Nov 14. [Epub ahead of print]
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Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging.
Ramallo Guevara C, Philipp O, Hamann A, Werner A, Osiewacz HD, Rexroth S, Rögner M, Poetsch A.
Mol Cell Proteomics. 2016 May;15(5):1692-709. doi: 10.1074/mcp.M115.055616. Epub 2016 Feb 16.
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Expression of brain-derived neurotrophic factor in astrocytes - Beneficial effects of glatiramer acetate in the R6/2 and YAC128 mouse models of Huntington's disease.
Reick C, Ellrichmann G, Tsai T, Lee DH, Wiese S, Gold R, Saft C, Linker RA.
Exp Neurol. 2016 Nov;285(Pt A):12-23. doi: 10.1016/j.expneurol.2016.08.012. Epub 2016 Aug 29.
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The Bisphenol A analogue Bisphenol S binds to K-Ras4B--implications for 'BPA-free' plastics.
Schöpel M, Herrmann C, Scherkenbeck J, Stoll R.
FEBS Lett. 2016 Feb;590(3):369-75. doi: 10.1002/1873-3468.12056. Epub 2016 Feb 3.
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Key players in neurodegenerative disorders in focus-New insights into the proteomic profile of Alzheimer's disease, schizophrenia, ALS, and multiple sclerosis-24th HUPO BPP Workshop: September 29, 2015, Vancouver, Canada.
Schrötter A, Park YM, Marcus K, Martins-de-Souza D, Nilsson P, Magraoui FE, Meyer HE, Grinberg LT.
Proteomics. 2016 Apr;16(7):1047-50. doi: 10.1002/pmic.201600047.
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New insights from an old mutant: SPADIX4 governs fruiting body development but not hyphal fusion in Sordaria macrospora.
Teichert I, Lutomski M, Märker R, Nowrousian M, Kück U.
Mol Genet Genomics. 2016 Oct 21. [Epub ahead of print]
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The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution. Biochim Biophys Acta.
Veit S, Nagadoi A, Rögner M, Rexroth S, Stoll R, Ikegami T.
2016 Jun;1857(6):705-14. doi: 10.1016/j.bbabio.2016.03.023. Epub 2016 Mar 29.
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Small Molecules Antagonise the MIA-Fibronectin Interaction in Malignant Melanoma.
Yip KT, Zhong XY, Seibel N, Pütz S, Autzen J, Gasper R, Hofmann E, Scherkenbeck J, Stoll R.
Sci Rep. 2016 May 6;6:25119. doi: 10.1038/srep25119.
2015
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Multiple cerebral infarctions in a young patient with heroin-induced hypereosinophilic syndrome.
Bolz J, Meves SH, Kara K, Reinacher-Schick A, Gold R, Krogias C.
J Neurol Sci. 2015 Sep 15;356(1-2):193-5. doi: 10.1016/j.jns.2015.06.031. Epub 2015 Jun 16.
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The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments.
Diehl HC, Beine B, Elm J, Trede D, Ahrens M, Eisenacher M, Marcus K, Meyer HE, Henkel C.
Anal Bioanal Chem. 2015 Mar;407(8):2223-43. doi: 10.1007/s00216-014-8345-z. Epub 2015 Feb 17.
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Chloroplast SRP54 Was Recruited for Posttranslational Protein Transport via Complex Formation with Chloroplast SRP43 during Land Plant Evolution.
Dünschede B, Träger C, Schröder CV, Ziehe D, Walter B, Funke S, Hofmann E, Schünemann D.
J Biol Chem. 2015 May 22;290(21):13104-14. doi: 10.1074/jbc.M114.597922. Epub 2015 Apr 1.
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Label-free Raman spectroscopic imaging monitors the integral phys-iologically relevant drug responses in cancer cells.
El-Mashtoly SF, Yosef HK, Petersen D, Mavarani L, Maghnouj A, Hahn SA, Kötting C, Gerwert K.
Anal Chem. 2015 Jun 15. [Epub ahead of print]
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Marker-free automated histopathological annotation of lung tumour subtypes by FTIR imaging.
Großerueschkamp F, Kallenbach-Thieltges A, Behrens T, Brüning T, Altmayer M, Stamatis G, Theegarten D, Gerwert K.
Analyst. 2015 Apr 7;140(7):2114-20. doi: 10.1039/c4an01978d.
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ProCon - PROteomics CONversion tool.
Mayer G, Stephan C, Meyer HE, Kohl M, Marcus K, Eisenacher M.
J Proteomics. 2015 Jul 13. pii: S1874-3919(15)30053-1. doi: 10.1016/j.jprot.2015.06.015. [Epub ahead of print]
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An infrared sensor analysing label-free the secondary structure of the Abeta peptide in presence of complex fluids.
Nabers A, Ollesch J, Schartner J, Kötting C, Genius J, Haußmann U, Klafki H, Wiltfang J, Gerwert K.
J Biophotonics. 2015 Mar 23;9999(9999). doi: 10.1002/jbio.201400145. [Epub ahead of print]
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A Redox Hydrogel Protects the O2 -Sensitive [FeFe]-Hydrogenase from Chlamydomonas reinhardtii from Oxidative Damage.
Oughli AA, Conzuelo F, Winkler M, Happe T, Lubitz W, Schuhmann W, Rüdiger O, Plumeré N.
Angew Chem Int Ed Engl. 2015 Jun 12. doi: 10.1002/anie.201502776. [Epub ahead of print]
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Catalysis of GTP Hydrolysis by Small GTPases at Atomic Detail by Integration of X-ray Crystallography, Experimental, and Theoretical IR Spectroscopy.
Rudack T, Jenrich S, Brucker S, Vetter IR, Gerwert K, Kötting C.
J Biol Chem. 2015 Oct 2;290(40):24079-90. doi: 10.1074/jbc.M115.648071. Epub 2015 Aug 13.
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Chemical Functionalization of Germanium with Dextran Brushes for Immobilization of Proteins Revealed by Attenuated Total Reflection Fourier Transform Infrared Difference Spectroscopy.
Schartner J, Hoeck N, Güldenhaupt J, Mavarani L, Nabers A, Gerwert K, Kötting C.
Anal Chem. 2015 Jul 21;87(14):7467-75. doi: 10.1021/acs.analchem.5b01823. Epub 2015 Jul 8.
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Improved preparation of nasal lavage fluid (NLF) as a noninvasive sample for proteomic biomarker discovery.
Schoenebeck B, May C, Güldner C, Respondek G, Mollenhauer B, Hoeglinger G, Meyer HE, Marcus K.
Biochim Biophys Acta. 2015 Jul;1854(7):741-5. doi: 10.1016/j.bbapap.2015.01.015. Epub 2015 Feb 10.
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New milestones in the development of characterization tools for neurodegenerative diseases in proteomics: 22nd HUPO BPP Workshop 7 October 2014, Madrid, Spain.
Schrötter A, Magraoui FE, Marcus K, Park YM, Meyer HE, Grinberg LT.
Proteomics. 2015 Feb;15(4):627-9. doi: 10.1002/pmic.201570035.
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Integration of Fourier Transform Infrared Spectroscopy, Fluorescence Spectroscopy, Steady-State Kinetics and Molecular Dynamics Simulations of Gαi1 distinguishes between the GTP Hydrolysis and GDP Release Mechanism.
Schröter G, Mann D, Kötting C, Gerwert K.
J Biol Chem. 2015 May 15. pii: jbc.M115.651190. [Epub ahead of print]
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PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.
Uszkoreit J, Maerkens A, Perez-Riverol Y, Meyer HE, Marcus K, Stephan C, Kohlbacher O, Eisenacher M.
J Proteome Res. 2015 Jun 10. [Epub ahead of print]
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Simultaneous measurements of photocurrents and H2O2 evolution from solvent exposed photosystem 2 complexes.
Vöpel T, Ning Saw E, Hartmann V, Williams R, Müller F, Schuhmann W, Plumeré N, Nowaczyk M, Ebbinghaus S, Rögner M.
Biointerphases. 2015 Mar 22;11(1):019001. doi: 10.1116/1.4938090.
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Antimicrobial Peptides from the Aurein Family Form Ion-Selective Pores in Bacillus subtilis.
Wenzel M, Senges CH, Zhang J, Suleman S, Nguyen M, Kumar P, Chiriac AI, Stepanek JJ, Raatschen N, May C, Krämer U, Sahl HG, Straus SK, Bandow JE.
Chembiochem. 2015 May 4;16(7):1101-8. doi: 10.1002/cbic.201500020. Epub 2015 Mar 27.
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Quantitative phosphoproteomics reveals the protein tyrosine kinase Pyk2 as a central effector of olfactory receptor signaling in prostate cancer cells.
Wiese H, Gelis L, Wiese S, Reichenbach C, Jovancevic N, Osterloh M, Meyer HE, Neuhaus EM, Hatt HH, Radziwill G, Warscheid B.
Biochim Biophys Acta. 2015 Jun;1854(6):632-40. doi: 10.1016/j.bbapap.2014.09.002. Epub 2014 Sep 9.
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The role of extracellular matrix in spinal cord development.
Wiese S, Faissner A.
Exp Neurol. 2015 May 28. pii: S0014-4886(15)30005-4. doi: 10.1016/j.expneurol.2015.05.018. [Epub ahead of print]
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Microarray hybridization analysis of light-dependent gene expression in Penicillium chrysogenum identifies bZIP transcription factor PcAtfA.
Wolfers S, Kamerewerd J, Nowrousian M, Sigl C, Zadra I, Kürnsteiner H, Kück U, Bloemendal S.
J Basic Microbiol. 2015 Apr;55(4):480-9. doi: 10.1002/jobm.201400588. Epub 2015 Jan 2.
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Light Induced H2 Evolution from a Biophotocathode Based on Photosystem 1 - Pt Nanoparticles Complexes Integrated in Solvated Redox Polymers Films.
Zhao F, Conzuelo F, Hartmann V, Li H, Nowaczyk MM, Plumeré N, Rögner M, Schuhmann W.
J Phys Chem B. 2015 Jun 19. [Epub ahead of print]
2014
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Analysis of U2 Small Nuclear RNA Fragments in the Bile Differentiates Cholangiocarcinoma from Primary Sclerosing Cholangitis and Other Benign Biliary Disorders.
Baraniskin A, Nöpel-Dünnebacke S, Schumacher B, Gerges C, Bracht T, Sitek B, Meyer HE, Gerken G, Dechene A, Schlaak JF, Schroers R, Pox C, Schmiegel W, Hahn SA.
Dig Dis Sci. 2014 Jan 31. [Epub ahead of print]
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Scaffolding by MUPP1 regulates odorant-mediated signaling in olfactory sensory neurons.
Baumgart S, Jansen F, Bintig W, Kalbe B, Herrmann C, Klumpers F, Köster SD, Scholz P, Rasche S, Dooley R, Metzler-Nolte N, Spehr M, Hatt H, Neuhaus EM.
J Cell Sci. 2014 Mar 20. [Epub ahead of print]
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New Insights Into the Roles of NADPH Oxidases in Sexual Development and Ascospore Germination in Sordaria macrospora.
Dirschnabel DE, Nowrousian M, Cano-Domínguez N, Aguirre J, Teichert I, Kück U.
Genetics. 2014 Mar;196(3):729-44. doi: 10.1534/genetics.113.159368. Epub 2014 Jan 9.
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Automated identification of subcellular organelles by coherent anti-stokes Raman scattering.
El-Mashtoly SF, Niedieker D, Petersen D, Krauss SD, Freier E, Maghnouj A, Mosig A, Hahn S, Kötting C, Gerwert K.
Biophys J. 2014 May 6;106(9):1910-20. doi: 10.1016/j.bpj.2014.03.025.
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Label-free imaging of drug distribution and metabolism in colon cancer cells by Raman microscopy.
El-Mashtoly SF, Petersen D, Yosef HK, Mosig A, Reinacher-Schick A, Kötting C, Gerwert K.
Analyst. 2014 Mar 7;139(5):1155-61. doi: 10.1039/c3an01993d. Epub 2014 Jan 15.
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The Cytosolic Domain of Pex22p Stimulates the Pex4p-Dependent Ubiquitination of the PTS1-Receptor.
El Magraoui F, Schrötter A, Brinkmeier R, Kunst L, Mastalski T, Müller T, Marcus K, Meyer HE, Girzalsky W, Erdmann R, Platta HW.
PLoS One. 2014 Aug 27;9(8):e105894. doi: 10.1371/journal.pone.0105894. eCollection 2014.
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Reaction Mechanism of Adenylyltransferase DrrA from Legionella pneumophila Elucidated by Time-Resolved Fourier Transform Infrared Spectroscopy.
Gavriljuk K, Schartner J, Itzen A, Goody RS, Gerwert K, Kötting C.
J Am Chem Soc. 2014 Jul 2;136(26):9338-45. doi: 10.1021/ja501496d. Epub 2014 Jun 20.
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Redox hydrogels with adjusted redox potential for improved efficiency in Z-scheme inspired biophotovoltaic cells.
Hartmann V, Kothe T, Pöller S, El-Mohsnawy E, Nowaczyk MM, Plumeré N, Schuhmann W, Rögner M.
Phys Chem Chem Phys. 2014 Mar 20. [Epub ahead of print]
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What vibrations tell us about GTPases.
Kötting C, Gerwert K.
Biol Chem. 2014 Aug 2. pii: /j/bchm.just-accepted/hsz-2014-0219/hsz-2014-0219.xml. doi: 10.1515/hsz-2014-0219. [Epub ahead of print]
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Engineered electron-transfer chain in photosystem 1 based photocathodes outperforms electron-transfer rates in natural photosynthesis.
Kothe T, Pöller S, Zhao F, Fortgang P, Rögner M, Schuhmann W, Plumeré N.
Chemistry. 2014 Aug 25;20(35):11029-34. doi: 10.1002/chem.201402585. Epub 2014 Jul 25.
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The Membrane Proteome of Sensory Cilia to the Depth of Olfactory Receptors.
Kuhlmann K, Tschapek A, Wiese H, Eisenacher M, Meyer HE, Hatt HH, Oeljeklaus S, Warscheid B.
Mol Cell Proteomics. 2014 Apr 18. [Epub ahead of print]
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A Modified Infrared Spectrometer with High Time Resolution and Its Application for Investigating Fast Conformational Changes of the GTPase Ras.
Lin J, Gerwert K, Kötting C.
Appl Spectrosc. 2014 May;68(5):531-5. doi: 10.1366/13-07320.
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Highly immunoreactive IgG antibodies directed against a set of twenty human proteins in the sera of patients with amyotrophic lateral sclerosis identified by protein array.
May C, Nordhoff E, Casjens S, Turewicz M, Eisenacher M, Gold R, Brüning T, Pesch B, Stephan C, Woitalla D, Penke B, Janáky T, Virók D, Siklós L, Engelhardt JI, Meyer HE.
PLoS One. 2014 Feb 26;9(2):e89596. doi: 10.1371/journal.pone.0089596. eCollection 2014.
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Activation of RidA chaperone function by N-chlorination.
Müller A, Langklotz S, Lupilova N, Kuhlmann K, Bandow JE, Leichert LI.
Nat Commun. 2014 Dec 17;5:5804. doi: 10.1038/ncomms6804.
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Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SERCA2) as new binding proteins in the human brain.
Nensa FM, Neumann MH, Schrötter A, Przyborski A, Mastalski T, Susdalzew S, Looβe C, Helling S, El Magraoui F, Erdmann R, Meyer HE, Uszkoreit J, Eisenacher M, Suh J, Guénette SY, Röhner N, Kögel D, Theiss C, Marcus K, Müller T.
Mol Cell Proteomics. 2014 Feb;13(2):475-88. doi: 10.1074/mcp.M113.029280.
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Prognostic value of microsatellite instability and p53 expression in metastatic colorectal cancer treated with oxaliplatin and fluoropyrimidine-based chemotherapy.
Nöpel-Dünnebacke S, Schulmann K, Reinacher-Schick A, Porschen R, Schmiegel W, Tannapfel A, Graeven U.
Z Gastroenterol. 2014 Dec;52(12):1394-401. doi: 10.1055/s-0034-1366781. Epub 2014 Dec 4.
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Insights into the Biosynthesis and Assembly of Cryptophycean Phycobiliproteins.
Overkamp KE, Gasper R, Kock K, Herrmann C, Hofmann E, Frankenberg-Dinkel N.
J Biol Chem. 2014 Aug 5. pii: jbc.M114.591131. [Epub ahead of print]
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Chromophore composition of the phycobiliprotein Cr-PC577 from the cryptophyte Hemiselmis pacifica.
Overkamp KE, Langklotz S, Aras M, Helling S, Marcus K, Bandow JE, Hoef-Emden K, Frankenberg-Dinkel N.
Photosynth Res. 2014 Aug 19. [Epub ahead of print]
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It's in your blood: spectral biomarker candidates for urinary bladder cancer from automated FTIR spectroscopy.
Ollesch J, Heinze M, Heise HM, Behrens T, Brüning T, Gerwert K.
J Biophotonics. 2014 Apr;7(3-4):210-21. doi: 10.1002/jbio.201300163. Epub 2014 Jan 7.
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Proteomic analysis of mitochondria from senescent Podospora anserina casts new light on ROS dependent aging mechanisms.
Plohnke N, Hamann A, Poetsch A, Osiewacz HD, Rögner M, Rexroth S.
Exp Gerontol. 2014 Feb 18. pii: S0531-5565(14)00056-4. doi: 10.1016/j.exger.2014.02.008. [Epub ahead of print]
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Immobilization of Proteins in their Physiological Active State at Functionalized Thiol Monolayers on ATR-Germanium Crystals.
Schartner J, Gavriljuk K, Nabers A, Weide P, Muhler M, Gerwert K, Kötting C.
Chembiochem. 2014 Sep 24. doi: 10.1002/cbic.201402478. [Epub ahead of print]
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Frontiers in neurodegeneration--new insights and prospects--20th HUPO BPP Workshop: 15 September 2013, Yokohama, Japan.
Schrötter A, El Magraoui F, Gröttrup B, Heinsen H, Marcus K, Meyer HE, Park YM, Grinberg LT.
Proteomics. 2014 Jun;14(11):1305-7. doi: 10.1002/pmic.201470084.
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The Filamentous Fungus Sordaria macrospora as a Genetic Model to Study Fruiting Body Development.
Teichert I, Nowrousian M, Pöggeler S, Kück U.
Adv Genet. 2014;87:199-244. doi: 10.1016/B978-0-12-800149-3.00004-4.
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Small cationic antimicrobial peptides delocalize peripheral membrane proteins.
Wenzel M, Chiriac AI, Otto A, Zweytick D, May C, Schumacher C, Gust R, Albada HB, Penkova M, Krämer U, Erdmann R, Metzler-Nolte N, Straus SK, Bremer E, Becher D, Brötz-Oesterhelt H, Sahl HG, Bandow JE.
Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):E1409-18. doi: 10.1073/pnas.1319900111. Epub 2014 Mar 24.
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Quantitative phosphoproteomics reveals the protein tyrosine kinase Pyk2 as a central effector of olfactory receptor signaling in prostate cancer cells.
Wiese H, Gelis L, Wiese S, Reichenbach C, Jovancevic N, Osterloh M, Meyer HE, Neuhaus EM, Hatt HH, Radziwill G, Warscheid B.
Biochim Biophys Acta. 2014 Sep 8. pii: S1570-9639(14)00225-8. doi: 10.1016/j.bbapap.2014.09.002. [Epub ahead of print]
2013
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Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures.
Ahrens M, Turewicz M, Casjens S, May C, Pesch B, Stephan C, Woitalla D, Gold R, Brüning T, Meyer HE, Rahnenführer J, Eisenacher M.
PLoS One. 2013 Nov 22;8(11):e79380. doi: 10.1371/journal.pone.0079380.
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Circulating U2 small nuclear RNA fragments as a novel diagnostic biomarker for pancreatic and colorectal adenocarcinoma.
Baraniskin, A., Nöpel-Dünnebacke, S., Ahrens, M., Jensen, S.G., Zöllner, H., Maghnouj, A., Wos, A., Mayerle, J., Munding, J., Kost, D., Reinacher-Schick, A., Liffers, S., Schroers, R., Chromik, A.M., Meyer, H.E., Uhl, W., Klein-Scory, S., Weiss, F.U., Stephan, C., Schwarte-Waldhoff, I., Lerch, M.M., Tannapfel, A., Schmiegel, W., Andersen, C.L., Hahn, S.A.
Int J Cancer. 2013 Jan 15;132(2):E48-57. doi: 10.1002/ijc.27791
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ß-catenin, Cox-2 and p53 immunostaining in colorectal adenomas to predict recurrence after endoscopic polypectomy.
Brand, L., Munding, J., Pox, C.P., Ziebarth, W., Reiser, M., Hüppe, D., Schmiegel, W., Reinacher-Schick, A., Tannapfel, A.
Int J Colorectal Dis. 2013 Mar 21.
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Diagnostic value of the impairment of olfaction in Parkinson's disease.
Casjens S, Eckert A, Woitalla D, Ellrichmann G, Turewicz M, Stephan C, Eisenacher M, May C, Meyer HE, Brüning T, Pesch B.
PLoS One. 2013 May 16;8(5):e64735. doi: 10.1371/journal.pone.0064735. Print 2013.
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Differential control of Salmonella heat shock operons by structured mRNAs.
Cimdins A, Roßmanith J, Langklotz S, Bandow JE, Narberhaus F.
Mol Microbiol. 2013 Aug;89(4):715-31. doi: 10.1111/mmi.12308. Epub 2013 Jul 11.
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Ras and rheb signaling in survival and cell death.
Ehrkamp A, Herrmann C, Stoll R, Heumann R.
Cancers (Basel). 2013 May 28;5(2):639-61. doi: 10.3390/cancers5020639.
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Distinct ubiquitination cascades act on the peroxisomal targeting signal type 2 co-receptor Pex18p.
El Magraoui F, Brinkmeier R, Schrötter A, Girzalsky W, Müller T, Marcus K, Meyer HE, Erdmann R, Platta HW.
Traffic. 2013 Dec;14(12):1290-301. doi: 10.1111/tra.12120. Epub 2013 Oct 7.
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Membrane extraction of Rab proteins by GDP dissociation inhibitor characterized using attenuated total reflection infrared spectroscopy.
Gavriljuk K, Itzen A, Goody RS, Gerwert K, Kötting C.
Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13380-5. doi: 10.1073/pnas.1307655110. Epub 2013 Jul 29.
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Primary hippocampal neurons, which lack four crucial extracellular matrix molecules, display abnormalities of synaptic structure and function and severe deficits in perineuronal net formation.
Geissler M, Gottschling C, Aguado A, Rauch U, Wetzel CH, Hatt H, Faissner A.
J Neurosci. 2013 May 1;33(18):7742-55. doi: 10.1523/JNEUROSCI.3275-12.2013.
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Prognostic factors for 60-day mortality in first-line treatment of metastatic colorectal cancer (mCRC): individual patient analysis of four randomised, controlled trials by the AIO colorectal cancer study group.
Giessen C, Graeven U, Laubender RP, Modest DP, Schulz C, Porschen R, Schmiegel W, Reinacher-Schick A, Hegewisch-Becker S, Stintzing S, Heinemann V.
Ann Oncol. 2013 Dec;24(12):3051-5. doi: 10.1093/annonc/mdt402. Epub 2013 Oct 14.
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Challenges in modern biomarker discovery--17th HUPO BPP workshop: May 24-25, 2012, Sao Paulo, Brazil.
Gröttrup, B., Esselmann, H., May, C., Schrötter, A., Woitalla, D., Heinsen, H., Marcus, K., Wiltfang, J., Meyer, H.E., Grinberg, L.T., Park, Y.M.
Proteomics. 2013 Jan;13(2):210-6. doi: 10.1002/pmic.201370025.
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The proteome of human liver peroxisomes: identification of five new peroxisomal constituents by a label-free quantitative proteomics survey.
Gronemeyer, T., Wiese, S., Ofman, R., Bunse, C., Pawlas, M., Hayen, H., Eisenacher, M., Stephan, C., Meyer, H.E., Waterham, H.R., Erdmann, R., Wanders, R.J., Warscheid, B.
PLoS One. 2013;8(2):e57395. doi:10.1371/journal.pone.0057395. Epub 2013 Feb 27.
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A LewisX glycoprotein screen identifies the low density lipoprotein receptor-related protein 1 (LRP1) as a modulator of oligodendrogenesis in mice.
Hennen E, Safina D, Haussmann U, Wörsdörfer P, Edenhofer F, Poetsch A, Faissner A.
J Biol Chem. 2013 Jun 7;288(23):16538-45. doi: 10.1074/jbc.M112.419812. Epub 2013 Apr 24.
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Differential expression of micro-heterogeneous LewisX-type glycans in the stem cell compartment of the developing mouse spinal cord.
Karus M, Hennen E, Safina D, Klausmeyer A, Wiese S, Faissner A.
Neurochem Res. 2013 Jun;38(6):1285-94. doi: 10.1007/s11064-013-1048-6. Epub 2013 Apr 30.
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A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients.
Kley, R.A., Maerkens, A., Leber, Y., Theis, V., Schreiner, A., van der Ven, P.F., Uszkoreit, J., Stephan, C., Eulitz, S., Euler, N., Kirschner, J., Müller, K., Meyer, H.E., Tegenthoff, M., Fürst, D.O., Vorgerd, M., Müller, T., Marcus, K.
Mol Cell Proteomics. 2013 Jan;12(1):215-27. doi: 10.1074/mcp.M112.023176
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Monitoring protein-ligand interactions by time-resolved FTIR difference spectroscopy.
Kötting C, Gerwert K.
Methods Mol Biol. 2013;1008:299-323. doi: 10.1007/978-1-62703-398-5_11.
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The dynamics of the catalytic site in small GTPases, variations on a common motif.
Kötting C, Gerwert K.
FEBS Lett. 2013 Jun 27;587(13):2025-7. doi: 10.1016/j.febslet.2013.05.021. Epub 2013 May 16.
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Combination of a photosystem 1-based photocathode and a photosystem 2-based photoanode to a z-scheme mimic for biophotovoltaic applications.
Kothe T, Plumeré N, Badura A, Nowaczyk MM, Guschin DA, Rögner M, Schuhmann W.
Angew Chem Int Ed Engl. 2013 Dec 23;52(52):14233-6. doi: 10.1002/anie.201303671. Epub 2013 Nov 7.
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Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress.
Lindemann C, Lupilova N, Müller A, Warscheid B, Meyer HE, Kuhlmann K, Eisenacher M, Leichert LI.
J Biol Chem. 2013 Jul 5;288(27):19698-714. doi: 10.1074/jbc.M113.457556. Epub 2013 May 21.
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Differential proteomic analysis of abnormal intramyoplasmic aggregates in desminopathy.
Maerkens A, Kley RA, Olivé M, Theis V, van der Ven PF, Reimann J, Milting H, Schreiner A, Uszkoreit J, Eisenacher M, Barkovits K, Güttsches AK, Tonillo J, Kuhlmann K, Meyer HE, Schröder R, Tegenthoff M, Fürst DO, Müller T, Goldfarb LG, Vorgerd M, Marcus K.
J Proteomics. 2013 Sep 2;90:14-27. doi: 10.1016/j.jprot.2013.04.026. Epub 2013 Apr 30.
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Structural and Thermodynamic Characterization of Nore1-SARAH: A Small, Helical Module Important in Signal Transduction Networks.
Makbul, C., Constantinescu Aruxandei, D., Hofmann, E., Schwarz, D., Wolf, E., Herrmann, C.
Biochemistry. 2013 Feb 12;52(6):1045-54. doi: 10.1021/bi3014642. Epub 2013 Jan 30.
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Spectral histopathology of colon cancer tissue sections by Raman imaging with 532 nm excitation provides label free annotation of lymphocytes, erythrocytes and proliferating nuclei of cancer cells.
Mavarani L, Petersen D, El-Mashtoly SF, Mosig A, Tannapfel A, Kötting C, Gerwert K.
Analyst. 2013 Jul 21;138(14):4035-9. doi: 10.1039/c3an00370a. Epub 2013 Jun 4.
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Nonnative disulfide bond formation activates the σ32-dependent heat shock response in Escherichia coli.
Müller A, Hoffmann JH, Meyer HE, Narberhaus F, Jakob U, Leichert LI.
J Bacteriol. 2013 Jun;195(12):2807-16. doi: 10.1128/JB.00127-13. Epub 2013 Apr 12.
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FE65 interactomics revealed SV2A and SERCA2 as new binding proteins in the human brain.
Nensa FM, Neumann MH, Schroetter A, Przyborski A, Mastalski T, Susdalzew S, Loosse C, Helling S, El Magraoui F, Erdmann R, Meyer HE, Uszkoreit J, Eisenacher M, Suh J, Guenette SY, Roehner N, Koegel D, Theiss C, Marcus K, Mueller T.
Mol Cell Proteomics. 2013 Nov 27. [Epub ahead of print]
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FTIR spectroscopy of biofluids revisited: an automated approach to spectral biomarker identification.
Ollesch J, Drees SL, Heise HM, Behrens T, Brüning T, Gerwert K.
Analyst. 2013 Jul 21;138(14):4092-102. doi: 10.1039/c3an00337j. Epub 2013 May 28.
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Undifferentiated embryonic stem cells express ionotropic glutamate receptor mRNAs.
Pachernegg S, Joshi I, Muth-Köhne E, Pahl S, Münster Y, Terhag J, Karus M, Werner M, Ma-Högemeier ZL, Körber C, Grunwald T, Faissner A, Wiese S, Hollmann M.
Front Cell Neurosci. 2013 Dec 3;7:241. doi: 10.3389/fncel.2013.00241.
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Combined enrichment of neuromelanin granules and synaptosomes from human substantia nigra pars compacta tissue for proteomic analysis.
Plum S, Helling S, Theiss C, Leite RE, May C, Jacob-Filho W, Eisenacher M, Kuhlmann K, Meyer HE, Riederer P, Grinberg LT, Gerlach M, Marcus K.
J Proteomics. 2013 Aug 3. pii: S1874-3919(13)00398-9. doi: 10.1016/j.jprot.2013.07.015. [Epub ahead of print]
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S3-guideline colorectal cancer version 1.0.
Pox C, Aretz S, Bischoff SC, Graeven U, Hass M, Heußner P, Hohenberger W, Holstege A, Hübner J, Kolligs F, Kreis M, Lux P, Ockenga J, Porschen R, Post S, Rahner N, Reinacher-Schick A, Riemann JF, Sauer R, Sieg A, Scheppach W, Schmitt W, Schmoll HJ, Schulmann K, Tannapfel A, Schmiegel W.
Z Gastroenterol. 2013 Aug;51(8):753-854. doi: 10.1055/s-0033-1350264. Epub 2013 Aug 16.
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Extracting iron and manganese from bacteria with ionophores - a mechanism against competitors characterized by increased potency in environments low in micronutrients.
Raatschen, N., Wenzel, M., Leichert, L.I., Düchting, P., Krämer, U., Bandow, J.E.
Proteomics. 2013 Feb 15. doi: 10.1002/pmic.201200556. [Epub ahead of print]
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Universal Method for Protein Immobilization on Chemically Functionalized Germanium Investigated by ATR-FTIR Difference Spectroscopy.
Schartner, J., Güldenhaupt, J., Mei, B., Rögner, M., Muhler, M., Gerwert, K., Kötting, C.
J Am Chem Soc. 2013 Mar 13;135(10):4079-4087. Epub 2013 Mar 4.
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Capecitabine/irinotecan or capecitabine/oxaliplatin in combination with bevacizumab is effective and safe as first-line therapy for metastatic colorectal cancer: a randomized phase II study of the AIO colorectal study group.
Schmiegel, W., Reinacher-Schick, A., Arnold, D., Kubicka, S., Freier, W., Dietrich, G., Geißler, M., Hegewisch-Becker, S., Tannapfel, A., Pohl, M., Hinke, A., Schmoll, H.J., Graeven, U.
Ann Oncol. 2013 Mar 4. [Epub ahead of print]
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Bisphenol A Binds to Ras Proteins and Competes with Guanine Nucleotide Exchange: Implications for GTPase-Selective Antagonists.
Schöpel M, Jockers KF, Düppe PM, Autzen J, Potheraveedu VN, Ince S, Yip KT, Heumann R, Herrmann C, Scherkenbeck J, Stoll R.
J Med Chem. 2013 Dec 12;56(23):9664-72. doi: 10.1021/jm401291q. Epub 2013 Nov 22.
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Early diagnosis of neurodegenerative diseases - the long awaited Holy Grail and bottleneck of modern brain research - 19th HUPO BPP workshop: May 22-24, 2013, Dortmund, Germany.
Schrötter A, Magraoui FE, Gröttrup B, Wiltfang J, Heinsen H, Marcus K, Meyer HE, Grinberg LT, Park YM.
Proteomics. 2013 Oct;13(20):2938-41. doi: 10.1002/pmic.201370164.
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FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres - potential relevance to Alzheimer's disease.
Schrötter, A., Mastalski, T., Nensa, F.M., Neumann, M., Loosse, C., Pfeiffer, K., Magraoui, F.E., Platta, H.W., Erdmann, R., Theiss, C., Uszkoreit, J., Eisenacher, M., Meyer, H.E., Marcus, K., Müller, T.
J Cell Sci. 2013 Apr 9.
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Evolution from the Prokaryotic to the Higher Plant Chloroplast Signal Recognition Particle: The Signal Recognition Particle RNA Is Conserved in Plastids of a Wide Range of Photosynthetic Organisms.
Träger, C., Rosenblad, M.A., Ziehe, D., Garcia-Petit, C., Schrader, L., Kock, K., Vera Richter, C., Klinkert, B., Narberhaus, F., Herrmann, C., Hofmann, E., Aronsson, H., Schünemann, D.
Plant Cell. 2012 Dec 28. [Epub ahead of print]
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7,8-Dihydroxyflavone leads to survival of cultured embryonic motoneurons by activating intracellular signaling pathways.
Tsai, T., Klausmeyer, A., Conrad, R., Gottschling, C., Leo, M., Faissner, A., Wiese, S.
Mol Cell Neurosci. 2013 Mar 14;56C:18-28. doi: 10.1016/j.mcn.2013.02.007.
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Improving the default data analysis workflow for large autoimmune biomarker discovery studies with ProtoArrays.
Turewicz M, May C, Ahrens M, Woitalla D, Gold R, Casjens S, Pesch B, Brüning T, Meyer HE, Nordhoff E, Böckmann M, Stephan C, Eisenacher M.
Proteomics. 2013 Jul;13(14):2083-7. doi: 10.1002/pmic.201200518. Epub 2013 Jun 20.
2012
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Biological and bio-inspired solar dihydrogen production.
Armstrong, F.A., Artero, V., Dau, H., Friedrich, B., Happe, T., Kurz, P., Lubitz, W., Rögner, M.
Leopoldina: Bioenergy - Chances and Limits
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Intestinal aspartate proteases TiCatD and TiCatD2 of the haematophagous bug Triatoma infestans (Reduviidae): sequence characterisation, expression pattern and characterisation of proteolytic activity.
Balczun, C., Siemanowski, J., Pausch, J.K., Helling, S., Marcus, K., Stephan, C., Meyer, H.E., Schneider, T., Cizmowski, C., Oldenburg, M., Höhn, S., Meiser, C.K., Schuhmann, W., Schaub, G.A.
Insect Biochemistry and Molecular Biology 42 (2012) 240-250.
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MiR-30a-5p suppresses tumor growth in colon carcinoma by targeting DTL.
Baraniskin, A., Birkenkamp-Demtroder, K., Maghnouj, A., Zöllner, H., Munding, J., Klein-Scory, S., Reinacher-Schick, A., Schwarte-Waldhoff, I., Schmiegel, W., Hahn, S.A.
Carcinogenesis. 2012 Apr;33(4):732-9. Epub 2012 Jan 27.
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Stepwise isolation of human peripheral erythrocytes, T-lymphocytes and monocytes for blood cell proteomics.
Brosseron, F., May, C., Schoenebeck, B., Tippler, B., Woitalla, D., Kauth, M., Brockmann, K., Meyer, H.E., Berg, D., Bufe, A., Marcus, K.
Proteomics Clin Appl. 2012 Aug 28. doi: 10.1002/prca.201200032. [Epub ahead of print]
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Prediction of a ligand-binding niche within a human olfactory receptor by combining site-directed mutagenesis with dynamic homology modeling.
Gelis, L., Wolf, S., Hatt, H., Neuhaus, E.M. and Gerwert, K.
Angew Chem Int Ed Engl. 2011 Dec 7. doi: 10.1002/anie.201107509. [Epub ahead of print]
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Vorhersage der Ligandenerkennung in einem Geruchsrezeptor durch Kombination von ortsgerichteter Mutagenese und dynamischer Homologie-Modellierung.
Gelis, L., Wolf, S., Hatt, H., Neuhaus, E.M. and Gerwert, K.
Angew. Chem., 124, 1300-1304.
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Heme oxygenases from Arabidopsis thaliana reveal different mechanisms of carbon monoxide binding.
Gisk, B., Molitor, B., Frankenberg-Dinkel, N. & Kötting, C.
Spectrochim. Acta A: Mol. Biomol. Spectroscopy 88, 235-240.
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N-Ras forms dimers at POPC membranes.
Güldenhaupt, J., Rudack, T., Bachler, P., Mann, D., Triola, G., Waldmann, H., Kötting, C. and Gerwert, K.
Biophysical Journal 103, 1585-1593.
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Catalytic mechanism of a mammalian Rab•RabGAP complex in atomic detail.
Gavriljuk, K., Gazdag, E.-M., Itzen, A., Kötting, C., Goody, R.S., Gerwert, K.
Proc. Natl. Acad. Sci., 109, 21348-21353
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Translational Proteomics in Neurodegenerative Diseases - 16th HUPO BPP Workshop September 5, 2011, Geneva, Switzerland.
Gröttrup, B., Böckmann, M., Stephan, C., Marcus, K., Grinberg, L.T., Meyer, H.E., Park, Y.M.
Proteomics. 2012 Feb;12(3):356-8. doi: 10.1002/pmic.201290017.
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Multiple phosphorylations of cytochrome c oxidase and their functions.
Helling, S., Hüttemann, M., Ramzan, R., Kim, S. H., Lee, I., Müller, T., Langenfeld, E., Meyer, H. E., Kadenbach, B., Vogt, S., Marcus, K.
Proteomics. 2012 Apr;12(7):950-9. doi: 10.1002/pmic.201100618.
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Normal sulfation levels regulate spinal cord neural precursor cell proliferation and differentiation.
Karus, M., Samtleben, S., Busse, C., Tsai, T., Dietzel, I.D., Faissner, A., Wiese, S.
Neural Dev. 2012 Jun 8;7:20. doi: 10.1186/1749-8104-7-20.
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A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients.
Kley, R.A., Maerkens, A., Leber, Y., Theiss, V., Schreiner, A., van der Ven, P.F., Uszkoreit, J., Stephan, C., Eulitz, S., Euler, N., Kirschner, J., Mueller, K., Meyer, H.E., Tegenthoff, M., Fuerst, D.O., Vorgerd, M., Mueller, T., Marcus, K.
Mol Cell Proteomics. 2012 Oct 31. [Epub ahead of print].
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Time-resolved FTIR spectroscopy for monitoring protein dynamics exemplified by functional studies of Ras protein bound to a lipid bilayer.
Kötting, C., Güldenhaupt, J. and Gerwert, K.
Chemical Physics, 396, 72-83.
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Characterization of damage to bacteria and bio-macromolecules caused by (V)UV radiation and particles generated by a microscale atmospheric pressure plasma jet.
Lackmann, J.W., Schneider, S., Narberhaus, F., Bendikt, J., Bandow, J.E.*
In Plasma in bio-decontamination, medicine and food security, NATO Science for Peace and Security Series A: Chemistry and Biology (Springer) 17-29.
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Differential proteome analysis using 2D-DIGE.
May, C., Brosseron, F., Chartowski, P., Meyer, H.E., Marcus, K.
Methods Mol Biol. 2012;893:75-82.
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Proteome analysis with classical 2D-PAGE.
May, C., Brosseron, F., Pfeiffer, K., Meyer, H.E., Marcus, K.
Methods Mol Biol. 2012;893:37-46.
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Cetuximab-based or bevacizumab-based first-line treatment in patients with KRAS p.G13D-mutated metastatic colorectal cancer: a pooled analysis.
Modest, D.P., Reinacher-Schick, A., Stintzing, S., Giessen, C., Tannapfel, A., Laubender, R.P., Brodowicz, T., Knittelfelder, R., Vrbanec, D., Schmiegel, W., Heinemann, V., Zielinski, C.C.
Anticancer Drugs. 2012 Jul;23(6):666-73.
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A ternary complex consisting of AICD, FE65, and TIP60 down-regulates Stathmin1.
Müller, T., Schrötter, A., Loosse, C., Pfeiffer, K., Theiss, C., Kauth, M., Meyer, H.E., Marcus, K.
Biochim Biophys Acta. 2012 Aug 7. pii: S1570-9639(12)00173-2. doi: 10.1016/j.bbapap.2012.07.017. [Epub ahead of print]
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Whole-Genome Sequencing of Sordaria macrospora Mutants Identifies Developmental Genes.
Nowrousian, M., Teichert I, Masloff S, Kück, U.
G3 (Bethesda). 2012 Feb;2(2):261-70. Epub 2012 Feb 1.
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Identification of core components and transient interactors of the peroxisomal importomer by dual-track stable isotope labeling with amino acids in cell culture analysis.
Oeljeklaus, S., Reinartz, B.S., Wolf, J., Wiese, S., Tonillo, J., Podwojski, K., Kuhlmann, K., Stephan, C., Meyer, H.E., Schliebs, W., Brocard, C., Erdmann, R., Warscheid, B.
J Proteome Res. 2012 Apr 6;11(4):2567-80. Epub 2012 Mar 23.
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Surface attached polyhistidine-tag proteins characterized by FTIR difference spectroscopy.
Pinkerneil, P., Güldenhaupt, J., Gerwert, K. and Kötting, C.
Chemphyschem. 2012 Aug 6;13(11):2649-53. doi: 10.1002/cphc.201200358. Epub 2012 Jun 15.
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Colorectal carcinoma: what's new?
Pox, C., Schmiegel, W., Reinacher-Schick, A.
Dtsch Med Wochenschr. 2012 Dec;137(49):2577-80. doi: 10.1055/s-0032-1327268. Epub 2012 Nov 27. German.
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Reactive oxygen species target specific tryptophan site in the mitochondrial ATP synthase.
Rexroth, S., Poetsch, A., Rögner, M., Werner, A., Hamann, A., Osiewacz, H.D., Schäfer, E.R., Seelert, H., Dencher, N.A.
Biochim Biophys Acta. 2012 Feb;1817(2):381-7. Epub 2011 Nov 19.
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Effect of KRAS codon13 mutations in patients with advanced colorectal cancer (advanced CRC) under oxaliplatin containing chemotherapy. Results from a translational study of the AIO colorectal study group.
Reinacher-Schick, A., Schulmann, K., Modest, D.P., Bruns, N., Graeven, U., Jaworska, M., Greil, R., Porschen, R., Arnold, D., Schmiegel, W., Tannapfel, A.
BMC Cancer. 2012 Aug 9;12:349. doi: 10.1186/1471-2407-12-349.
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Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations.
Rudack, T., Fei X., Schlitter, J., Kötting, C. and Gerwert, K.
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15295-300. Epub 2012 Sep 4.
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The role of magnesium for geometry and charge in GTP hydrolysis, revealed by quantum mechanics/molecular mechanics simulations.
Rudack, T., Fei X., Schlitter, J., Kötting, C. and Gerwert, K.
Biophys J. 2012 Jul 18;103(2):293-302. Epub 2012 Jul 17.
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The role of VUV radiation in the inactivation of bacteria with an atmospheric pressure plasma jet.
Schneider, S., Lackmann, J.W., Ellerweg, D., Denis, B., Narberhaus F., Bandow, J., Benedikt, J.
Plasma Processes and Polymers Volume 9, Issue 6, pages 561–568, June 2012.
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The Amyloid Precursor Protein (APP) Family Members are Key Players in S-adenosylmethionine Formation by MAT2A and Modify BACE1 and PSEN1 Gene Expression-Relevance for Alzheimer's Disease.
Schrötter, A., Pfeiffer, K., El Magraoui, F., Platta, H., Erdmann, R., Meyer, H.E., Egensperger, R., Marcus, K., Müller, T.
Mol Cell Proteomics. 2012 Nov;11(11):1274-88. doi: 10.1074/mcp.M112.019364. Epub 2012 Aug 9.
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Time-resolved Fourier Transform Infrared Spectroscopy of the Nucleotide-binding Domain from the ATP-binding Cassette Transporter MsbA.
Syberg, F., Suveyzdis, Y., Kötting, C., Gerwert, K. and Hofmann, E.
J Biol Chem. 2012 Jul 6;287(28):23923-31. Epub 2012 May 16.
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Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development.
Teichert, I., Wolff, G., Kück, U., Nowrousian, M.
BMC Genomics. 2012 Sep 27;13:511. doi: 10.1186/1471-2164-13-511.
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Modulation of Autoimmune Demyelination by Laquinimod via Induction of Brain-Derived Neurotrophic Factor.
Thöne, J., Ellrichmann, G., Seubert, S., Peruga, I., Lee, D.H., Conrad, R., Hayardeny, L., Comi, G., Wiese, S., Linker, R.A., Gold, R.
Am J Pathol. 2012 Jan;180(1):267-74. Epub 2011 Dec 5.
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Astrocytes as a source for extracellular matrix molecules and cytokines.
Wiese, S., Karus, M., Faissner, A.
Front Pharmacol. 2012;3:120. Epub 2012 Jun 26.
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Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens.
Wilms, I., Overlöper, A., Nowrousian, M., Sharma, C.M., Narberhaus, F.
RNA Biol. 2012 Apr 1;9(4):446-57. doi: 10.4161/rna.17212. Epub 2012 Feb 16.
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Detailed structure of the H2PO4--GDP intermediate in Ras-GAP decoded from FTIR experiments by biomolecular simulations.
Xia, F., Rudack, T., Cui, Q., Kötting, C., Gerwert, K.
Journal of the American Chemical Society, DOI: 10.1021/ja310496e